Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3018 ATGAATAACAATATGAACTGTGTCGCAAGCTATCCTGACTCCTGCCTGATTGCTTTAGTGAGCTTTGTTATATCTTCTGTTCATTGCTTTACTTTTCAGGAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTCGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCACTCCTGAACCCAGgtgGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACGAGTGCTTGCTTTTGAAGCAGGAAGAAAGCACAAAATTAGAGTCAATACTATATCTGCTGGTCCACTAAGAAGTCGTGCTGCAAAGGCTATTGGGTTCATTGATATGATGATTGATTATTCATTAGCCAATGCACCTCTGCAGAAAGAACTGTCAGCAGAGGAGGTGGGTAATGCAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATATGTTGACAATGGTCTGAATGCTATGGGTGTTGGAGTTGACAGTCCAATATTTAAAGATCTTGACATTCCCAAGGACCAGCATTAA 702 0.4174 MNNNMNCVASYPDSCLIALVSFVISSVHCFTFQEVAESVKEDFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSYVSLLKHFLPLLNPGGSSISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKHKIRVNTISAGPLRSRAAKAIGFIDMMIDYSLANAPLQKELSAEEVGNAAAFLASPLASAITGTVLYVDNGLNAMGVGVDSPIFKDLDIPKDQH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3018 233 PRINTS Glucose/ribitol dehydrogenase family signature 140 157 IPR002347 -
Ssu3g3018 233 PRINTS Glucose/ribitol dehydrogenase family signature 44 55 IPR002347 -
Ssu3g3018 233 PRINTS Glucose/ribitol dehydrogenase family signature 175 195 IPR002347 -
Ssu3g3018 233 PRINTS Glucose/ribitol dehydrogenase family signature 118 137 IPR002347 -
Ssu3g3018 233 Gene3D Enoyl acyl carrier protein reductase 162 219 - -
Ssu3g3018 233 PANTHER ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH], CHLOROPLASTIC 30 232 - -
Ssu3g3018 233 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 215 IPR036291 -
Ssu3g3018 233 Gene3D - 27 161 - -
Ssu3g3018 233 Pfam Enoyl-(Acyl carrier protein) reductase 32 212 - -
Ssu3g3018 233 PANTHER ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 30 232 IPR014358 GO:0004318|GO:0006633
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3018 Ssu-Chr3 85390188 85392201 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3018 30 227 Acyl Lipid Metabolism Gene Families AT2G05990 84.343 1.90e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3018 K00208 - gmx:100785606 377.096