Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3012 ATGCTTGTAGCTCGAAACCTCTCCCCTTCAAAGCTTAAGCCACTCTTTTATCTATCTCTCCTTTGTGAATGCAACAACCATTCCCACTCAAATATCTTTTCAACCTTAATACCATACTCAAAACCCCATCTCCAAAACTTCCCAACATGTTCACCTCAGCCGTCAATTAGTTTGTTTAGGTTTTTCTCTTCACAACCTGCTGATTCAGCTACGAAACAGAATTTGCCCCTCTCTCGTGAAGGTAATTATGATGAAGCCACTTCCCAATCTCTTCATGTTTGCCCTGGCTGTGGGGTTTATATGCAAGATTCCAACCCTAAACACCCTGGTTATTTTATCAAACCCTCTGAGAAGGACTTGAATTATAGATTGTATACCAATCTTGAACCCGTTGCACAGGAGCCTGAGTTCTCTAACTCTGTTAAAAGGGGTATTGTTATTGAGCCAGAAAAgcttaatgatgatgatgatgcaaACTTGATAAAGAAACCAGAGAAGCCTGTGGTGTGTGCACGCTGTCATTCGTTGAGGCACTATGGGAAGGTGAAGGATCCAACGGTGGAAAACTTGTTACCTGATTTTGACTTTGATCACACGGTGGGTAGGAAGTTGGCATCAACAAGTGGGACCCGGTCCGTGGTGCTGATGGTTGTGGATGCAGTGGATTTTGATGGGTCGTTTCCAAGGAAGGTTGCAAAGTTGGTGTCTAAGACAATTGAGGATCATTCTGCTGCATGGAAGCAGGGTAAGTCGGCAAATGTTCCTAGAGTGGTGCTTGTGGTGACAAAGATTGACCTGTTGCCTAGCTCATTGTCACCAACAAGGTTGGAGCATTGGATTAGGCAGAGAGCAAGAGAGGGTGGGATTAATAAGGTTACTAGTTTGCACATGGTGAGTGCACTGAGGGATTGGGGACTGAAGAATCTTGTGGATAATGTAGTTGATTTGGCTGGACCTAGAGGGAATGTGTGGGCTGTTGGGGCGCAGAATGCGGGAAAGAGTACATTGATAAACTCTATAGGGAAGTATACTGGAGGGAAGATTACACATCTGACAGAAGCACCTGTGCCAGGGACTACACTAGGCATTGTTAGAGTGGAGGGTGTTCTTCCAAGTCAAGCAAAACTGTTTGATACACCCGGCCTGCTTCATCCTCACCAGATTACAACGAGGTTGATGAGGGAAGAGCAAAAGCTTGTTCATATGGGGAAGGAATTGAAACCTAGGACATACAGAATTAAGGCTGGTCATTCGATTCACATAGCTGGTCTAATGAGATTGGATATAGAAGAAACATCCCTGGATACCATTTATGTCACAGTGTGGGCTTCTCCTTATCTTCCACTGCATATGGgtaaaatagaaaatgcatgtaaaatgTTCCAAGATCATTTTGGGCGCCAGTTACAGCCACCAATTGGAGAAAAACGAGTACAAGAACTGGGGAATTGGGTGAGAAGGGAATTCCATGTTAGTGGGAACAGTTGGGAGTCAAGTTCTGTAGACATTGCTGCTGCTGGCCTCGGCTGGTTTGCCATTGGACTTAAAGGAGATGCATTGTTAGGTGTTTGGACTTATGAAGGAGTTGATGTTGTTCTTCGCAATTCTTTAATACCCTATAGATCACATACTTTTGAAGTTGCAGGATTTACCGTGTCCAAGATTGTCTCCCAATCTGACCAAGCTTTCAATAAGTCACGGCAACGAAATGACAAAAAGGCAAAGGGGATTGACTCAAAAGCGCCAACCAGTTTTGTTGAATCACCACTTTTGACTTCTGATGGAGGCATCTAA 1794 0.432 MLVARNLSPSKLKPLFYLSLLCECNNHSHSNIFSTLIPYSKPHLQNFPTCSPQPSISLFRFFSSQPADSATKQNLPLSREGNYDEATSQSLHVCPGCGVYMQDSNPKHPGYFIKPSEKDLNYRLYTNLEPVAQEPEFSNSVKRGIVIEPEKLNDDDDANLIKKPEKPVVCARCHSLRHYGKVKDPTVENLLPDFDFDHTVGRKLASTSGTRSVVLMVVDAVDFDGSFPRKVAKLVSKTIEDHSAAWKQGKSANVPRVVLVVTKIDLLPSSLSPTRLEHWIRQRAREGGINKVTSLHMVSALRDWGLKNLVDNVVDLAGPRGNVWAVGAQNAGKSTLINSIGKYTGGKITHLTEAPVPGTTLGIVRVEGVLPSQAKLFDTPGLLHPHQITTRLMREEQKLVHMGKELKPRTYRIKAGHSIHIAGLMRLDIEETSLDTIYVTVWASPYLPLHMGKIENACKMFQDHFGRQLQPPIGEKRVQELGNWVRREFHVSGNSWESSSVDIAAAGLGWFAIGLKGDALLGVWTYEGVDVVLRNSLIPYRSHTFEVAGFTVSKIVSQSDQAFNKSRQRNDKKAKGIDSKAPTSFVESPLLTSDGGI 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3012 597 Pfam 50S ribosome-binding GTPase 323 396 IPR006073 GO:0005525
Ssu3g3012 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 416 IPR027417 -
Ssu3g3012 597 CDD YqeH 170 382 - -
Ssu3g3012 597 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 65 567 - -
Ssu3g3012 597 Gene3D - 201 387 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3012 Ssu-Chr3 85284333 85286837 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3012 - - gmx:100787200 1112.83