Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3011 ATGGTGGCAGAAGTCAAGgtgatgacaacaacaacaaacaatgGTGGTAGCTACAAGCCTacggtgacaatggtggtgatgaAAGTAGCAATGACAATGTCGTTTACTTGTGAAAATGGTAGGGGTGACAATGATGAAGTTGTGACAATGAAAATGATGGTGACAATGATAACAATGAACATAGTGATGGTGACAATTACGAGACAATTTATAGTCCCTCAGGCGTTAAGCCTGAAAGGTGTGAGCACTTTCTATGCTTGGTTAGGCCTATTTGGGCAAACGATCCACATGCTTGTTCGGCCTATTTGGCCAAACGGTCTAAATGGTAACAATGACAATGATGATTATAAAGAAGGCAATGTTAATGGTATCATTGATAAACCAACGCGAACAGGAAGAGTTAAAGAGCTTGAAAGCAAGCAGCCTGTGAATCTGATGGCAAAAGAGGGAAGCGACATTGATGAAGTGAACGACGCATTGGATGGCgtgggagaagaagaagaggaagaaaacgCAGTACAGGAGGAAGATGACGTGGAAGAAGAGGAGGAGTATACTTTCAGGTTCAAAAATGGGATGAATCCTTTGGACTTTGtcgataataataatgattctGGCGTTCAACCCTACCAGCGATTCGAGCGTCTTGAACAGGAAGCTCTCGCCGATAAAAAGCGAAAAGCAACTGAACAATGCCACAGTGAAGAGTCACCTTCTAAGATGGCTAGGGAAGATGATATTTCCGGGGCAAAGATAGCTGAGATAATGGAAGCAATGAATTATTATGGTGTGCGCAAGAGATCGAGAAAGTCTAAAAAAAGAGGCAGGCGAAAAGGATCAAAGAATAAACTTGACCCCAAGCTAACACGGATGCTGGGTGATGCCACACTTCACTATGCATGTGACCATTATGACAAGGCTAAAGCTGTGTTGCTTGAAGTTGTTAGGCTGGCACCAAATTTACCTGATTCGTATCACACCCTTGGACTTGTCTATAGTTCACTACAGGATTATGACAGAGCTATGGGTTTTTACATGATTGCTGCTCATTTGACTCCAAAAGATTCATCTCtttggaaaatgatttttacGTGGTCCATAGAACAAGGTTATATTGGTCAAGCCCGTCATTGTCTTTTAAAAGCAATAACAGCAGATCCCAAAGATGTTACTCTTAGAGGTCATCTTGCAAGGCTTTATGTTGAACTCGGAGATTATCAAAAAGCTGCTGTGGCATATGAGCAAGTACATCAACTCTGTCGTGAGAATGTTGATGCACTGAAGGCAGCAGCTAAGTTCTACAAAAAATGTGGTCAAGTTGAATACTCTATTCATATTCTTGAAGACTATCTTAAGAGCCAACCTGATGGAGCAAACGCAAGTGTAATTGATCTGCTGGGTACCATATTGATGGAAACTAAGGCACATGACAGAGCTCTGCAGTATATTGAACGTGCTCAAGTGGTAAATGCGAGGAAAGAATTGCCTTTGAACTTGAAAATTAAGGCCGGAATTTGCCATGTTCATCTTGGAAACATGGAGATGGCTCAGGTTCTCTTTAATGATTTGAAACCAGAGAATGCAAGCAAGCATATTGACTTGGTTACTGAGGTTGCAGACTCATTAATGGGCCTTGAACATTATAATCCTGcattgaattattatttgatgttgGAAGGAAATATTGGAAATGAAAATGGTCTTCTGTATCTGAAAATTGCTAGATGTTATATGTCATTGAAAGAAAGGTCACAAGcaattctctttttttccaaagCCCTTGAAACACTACAAGATGATGTTGGTGCACGCATAACTCTGGCTTCCCTTCTGCTTGAAGAGGGAAAAGAAGATGAAGCAATTTCCTTGCTGTCTCCTCCAAAGGATTCTGACTCTGGTGAAGCACATTCTGAAAAGTCAAATAGATGGTGGGTTGATATAAGAATAAAACTGAAGCTCTGCAACATTTATTGGAATAGAGGGATGCTTGATGATTTTGCAGATACAATTTTCCCTTTGATTCGTGAATCATTGTATGTTGCAACTCTTCGACAGAAGGGTAAATCAAAAAGGCGACTCTCCAAAAGAGATCTGGTTGAAAGGGTTAGGGTACTGGATGGTCCGGAAAAGGATAATATATTTCGAGGATTTAGGCCAGTAGCTGCACCATCTGATCTGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTCCAGAAGAAGGCAATCGAAAAGGCGAAAAGAAAAGCTGAGGCACTAGCCTCTGGAATTGACTGGCTAAGTGATGACTCAGATGATGAGCCTCAGAAAGAAAACAGAGAACCTCCCTTGTGTAATCTTCTCAAAGATGAAGAACATCACCAGCTAGTAATTGATTTGTGCAAGGCATTAGCATCCCTGCAAAGGTATTGGGAAGCACTGGAGATAATTAATCTCACTCTAAGATTGGCCCATACATCTCTGTCTACTGAGAAGAAAGAGGAGCTTCGATCTCTTGGAGCTCAAATGGCATACAACACCACAGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGATACAAGACATTACAAATTTGTACGTGTTATGCAAGGAAAGTTTGTGGATTGTGTGCCTCCTATCCTCATTTCTGGGCATCAGTTTACCTTATTTAGCCATCATCAAGACGCAGCAAGGAAATACCTTGAAGCTTATAAACTATTGCCAGAGAATCCTTTGGTTAATCTTTGTGTTGGAACAGCCTTGATCAACTTAGCATTGGGTTTCAGACTTCAAAATAAGCATCAATGTGTTGTACAAGGTTTAGCATTCCTCTACAATAATTTGAGAATCTGTGAGAACAGCCAGGAATCCTTGTACAACATAGCTCGGGCATGCCATCATGTTGGTCTTGTAACTCTGGCAGCTTTTTATTATGAGAAAGTGATTGCTAATTGCGAGAGAGACTATCCAATTCCAAAACTTCCCAACGAGAATCCAGATGTCATCGAAAATCATAAACCTGGTTACTGCAACCTTCGCAGAGAGGCAGCTTACAATTTGCATTTGATCTACAAAAAAAGTGGTGCTTTTGATCTTGCTAGGCAAGTTCTCAAAGATCATTGTACCTTGTGA 3183 0.3911 MVAEVKVMTTTTNNGGSYKPTVTMVVMKVAMTMSFTCENGRGDNDEVVTMKMMVTMITMNIVMVTITRQFIVPQALSLKGVSTFYAWLGLFGQTIHMLVRPIWPNGLNGNNDNDDYKEGNVNGIIDKPTRTGRVKELESKQPVNLMAKEGSDIDEVNDALDGVGEEEEEENAVQEEDDVEEEEEYTFRFKNGMNPLDFVDNNNDSGVQPYQRFERLEQEALADKKRKATEQCHSEESPSKMAREDDISGAKIAEIMEAMNYYGVRKRSRKSKKRGRRKGSKNKLDPKLTRMLGDATLHYACDHYDKAKAVLLEVVRLAPNLPDSYHTLGLVYSSLQDYDRAMGFYMIAAHLTPKDSSLWKMIFTWSIEQGYIGQARHCLLKAITADPKDVTLRGHLARLYVELGDYQKAAVAYEQVHQLCRENVDALKAAAKFYKKCGQVEYSIHILEDYLKSQPDGANASVIDLLGTILMETKAHDRALQYIERAQVVNARKELPLNLKIKAGICHVHLGNMEMAQVLFNDLKPENASKHIDLVTEVADSLMGLEHYNPALNYYLMLEGNIGNENGLLYLKIARCYMSLKERSQAILFFSKALETLQDDVGARITLASLLLEEGKEDEAISLLSPPKDSDSGEAHSEKSNRWWVDIRIKLKLCNIYWNRGMLDDFADTIFPLIRESLYVATLRQKGKSKRRLSKRDLVERVRVLDGPEKDNIFRGFRPVAAPSDLLKASRAKKLLQKKAIEKAKRKAEALASGIDWLSDDSDDEPQKENREPPLCNLLKDEEHHQLVIDLCKALASLQRYWEALEIINLTLRLAHTSLSTEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRVMQGKFVDCVPPILISGHQFTLFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLRICENSQESLYNIARACHHVGLVTLAAFYYEKVIANCERDYPIPKLPNENPDVIENHKPGYCNLRREAAYNLHLIYKKSGAFDLARQVLKDHCTL 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3011 1060 MobiDBLite consensus disorder prediction 265 281 - -
Ssu3g3011 1060 SMART tpr_5 567 600 IPR019734 GO:0005515
Ssu3g3011 1060 SMART tpr_5 288 321 IPR019734 GO:0005515
Ssu3g3011 1060 SMART tpr_5 390 423 IPR019734 GO:0005515
Ssu3g3011 1060 SMART tpr_5 460 493 IPR019734 GO:0005515
Ssu3g3011 1060 SMART tpr_5 322 355 IPR019734 GO:0005515
Ssu3g3011 1060 SMART tpr_5 972 1005 IPR019734 GO:0005515
Ssu3g3011 1060 Gene3D Tetratricopeptide repeat domain 280 520 IPR011990 GO:0005515
Ssu3g3011 1060 Pfam Tetratricopeptide repeat 394 415 IPR019734 GO:0005515
Ssu3g3011 1060 Pfam Tetratricopeptide repeat 323 346 IPR019734 GO:0005515
Ssu3g3011 1060 SUPERFAMILY TPR-like 297 622 IPR011990 GO:0005515
Ssu3g3011 1060 MobiDBLite consensus disorder prediction 221 244 - -
Ssu3g3011 1060 Gene3D Tetratricopeptide repeat domain 522 669 IPR011990 GO:0005515
Ssu3g3011 1060 SUPERFAMILY TPR-like 535 1051 IPR011990 GO:0005515
Ssu3g3011 1060 MobiDBLite consensus disorder prediction 265 285 - -
Ssu3g3011 1060 ProSiteProfiles TPR repeat profile. 567 600 IPR019734 GO:0005515
Ssu3g3011 1060 Gene3D Tetratricopeptide repeat domain 721 1059 IPR011990 GO:0005515
Ssu3g3011 1060 ProSiteProfiles TPR repeat profile. 322 355 IPR019734 GO:0005515
Ssu3g3011 1060 Coils Coil 165 185 - -
Ssu3g3011 1060 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 165 1059 IPR039340 GO:0006383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3011 K15201 - gmx:100804533 1603.57