Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3010 ATGAAAAGAGGATTCGGTGTTGGAGCTCTCTTCATTTCCTTCCGTAACTGTAACGCTGTCTTGCCGCCGCCACACTCACTCCGCACCTTCTTTCGCGCCGTCAGATCTCTTTCTTCTCTGCCGTCCTCCGCCGCAGCCATGCCCGGAGCTGAGACTCACGATGTGGAGTGGCCGGCGAAGCGCGTCAGGGACACTTTCATCGGCTTCTTCCAAGACAAGAATCACGTCAACTGGAAGTCTAGCCCTGTCGTCCCCTTCAACGATCCCACTCTTCTCTTCGCCAACGCTGGTATGAACCAGTTCAAGCCAATCTTTTTGGGAACTGCAGATCCTAACACTGCCTTGAGCAAACTCTCTCGTGCTTGCAATACGCAGAAGTGCATTCGAGCTGGTGGTAAACACAATGATCTTGATGATGTAGGGAAGGATACCTACCATCACACCTTCTTTGAGATGTTGGGCAATTGGTCCTTTGGGGATTACTTTAAAGAAGAAGCCATCAGCTGGGCGTGGGAGCTTCTAACCAAAGTTTATAAATTACCGTCAGATCGCATTTATGTTACATATTTTGGTGGTGATGATAAGTCTGGTCTTGCCCCTGATTTTGAGGCTAGAGATATATGGCTAAAGTTTTTGCCTCCTGAGCGTGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGAAGCTGCATCATTGGTTAATAACGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCTCTGCCAGCAAAGCATGTTGATACAGGCTTGGGTTTTGAACGTTTGACTTCTATACTACAGAATAAAATGAGCAATTATGACACTGATGTCTTCTTGCCTATCTTTGATGGTATTCAGCGGGCAACTGGTGCCCGGCCATATTCTGGGAAAGTTGGAGCAGACGATGTAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTGTCATTTGCCATTGCTGATGGTTCTCGTCCTGgTAACGAGGGCCGTGAGTATGTTCTGAGACGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAGGGATTTTTCAATGGGCTTGTAAATGTTGTGGTGAATGTGATGGGCGATGTTTTCCCTGAGCTAAAACAACAGGAAATGCACATTCGTAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGGATTGAGAAATTTGAGACAGCTATTCAACATGTTCAGGGAAGGATACTAAGTGGGGAGGAAGCATTTGTCTTGTGGGATACATATGGGTTCCCATTAGATCTCACCCAGCTGATGGCTGAAGAAAAGGGATTAGTTGTTGATGTCAAAGGCTTCGATTGTGCTATGGAAGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGATGCTGATGCTACCTCAGCATTGCACAAAAGGGGCATTGCCCCAACAGATGATAGCTTcaaatatgtttggttcaagGACCATGAGAGTGTGGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATACTGTTAATACTGGTGATGATATTGGTGTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGGGTCCACATGCTTCATTTCAAGTTCGTAATGTTCAAGTTTATGGAGGCTTTGTTCTTCACATTGGTAATGGGACTGGTGTCTCTGTTGGCGACAAAGTAGTATGcaagGTTGATTATGGAAGACGTGCCCTTATAGCCCCTAACCATACATGCACGCACATGTTAAATTTTGCTCTTAGGGAAGTACTTGGTGATCATGTTGACCAGAAAGGATCCATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTGACAATTTAAGGAGAATTGAATCAATTGTTAATGAGCAAATTAAAGCTGAATTGGACGTAAGTGCAAAGGAGGCAACTCTTGCTGAAGCCAAGCGTATCAATGGTTTGCGAGCTGTTTTTGGAGAAGTCTATCCTGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTCCTTGCTGACCCCGAGAATGCTAAATGGTTATCTATTTCATCTGAATTATGTGGAGGCACCCATATTTCAAACACAAGAGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGCATTGCCAAAGGGATCCGCAGAATAACAGCTGTCACAACTGATCGTGCTTATGATACAATGAAAGTGGCAGATGAATTTGAGAAGCAAGTAGATGATGCGGCTAAGTTAGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATTGTTGAAAAGCAATGTTGAAACTTTATCAATTCCTGCTGCCAAGAAAGCTGACATCAAGACCAAGATAGCCCGACTTCAGGATCAAGTGAGAAAAGCACAAAAGCAGGTTGCTGAGGAAAACAAGCGTAAAGCTGTAATGATTACAGCTGAGAAGGCTGAACTTGCTGCTTCGAATGGGAAAACTTTTTGCATATCTCACATTGAAGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCTGTTACAAAAGTCATGGACCAGAAGGGCTTATCTGTGATGGTTTTTAGCACGGATGAATCTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCAGAGAAAGGAGATAAAGGTAAGCTAGATGTGGCGGAGTGGCTGAGTAATGCTTTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGGAAAGGTGGTCTTGCAACGGGTCAGGGTACAGATGCATTACATGTAAACGAGGCTATGGATCTTGCAGAAAAATTTGCGTCGATGAAATTGAGTTAA 2991 0.4376 MKRGFGVGALFISFRNCNAVLPPPHSLRTFFRAVRSLSSLPSSAAAMPGAETHDVEWPAKRVRDTFIGFFQDKNHVNWKSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTKVYKLPSDRIYVTYFGGDDKSGLAPDFEARDIWLKFLPPERVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNREAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFLPIFDGIQRATGARPYSGKVGADDVDKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVNVVVNVMGDVFPELKQQEMHIRNVIEEEEESFGRTLIKGIEKFETAIQHVQGRILSGEEAFVLWDTYGFPLDLTQLMAEEKGLVVDVKGFDCAMEAARERSRSAQTKQAGGAIVMDADATSALHKRGIAPTDDSFKYVWFKDHESVVKAIYTGSEFVDTVNTGDDIGVVLESTSFYAEQGGQIFDTGSLEGPHASFQVRNVQVYGGFVLHIGNGTGVSVGDKVVCKVDYGRRALIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAELDVSAKEATLAEAKRINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPENAKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDTMKVADEFEKQVDDAAKLEGSLLEEKVSLLKSNVETLSIPAAKKADIKTKIARLQDQVRKAQKQVAEENKRKAVMITAEKAELAASNGKTFCISHIEVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVVCAGVPEKGDKGKLDVAEWLSNALGPLKGRCGKGKGGLATGQGTDALHVNEAMDLAEKFASMKLS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3010 996 SUPERFAMILY ThrRS/AlaRS common domain 628 806 IPR018163 GO:0000166
Ssu3g3010 996 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 730 788 IPR012947 GO:0004812|GO:0005524|GO:0043039
Ssu3g3010 996 SUPERFAMILY Class II aaRS and biotin synthetases 59 309 IPR045864 -
Ssu3g3010 996 TIGRFAM alaS: alanine--tRNA ligase 62 973 IPR002318 GO:0000166|GO:0005737
Ssu3g3010 996 Gene3D - 629 805 - -
Ssu3g3010 996 CDD AlaRS_core 59 305 - -
Ssu3g3010 996 PANTHER ALANYL-TRNA SYNTHETASE 26 995 - -
Ssu3g3010 996 Coils Coil 842 869 - -
Ssu3g3010 996 Pfam DHHA1 domain 851 990 IPR003156 GO:0003676
Ssu3g3010 996 SMART tRNA_SAD_4 730 789 IPR012947 GO:0004812|GO:0005524|GO:0043039
Ssu3g3010 996 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 510 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Ssu3g3010 996 Gene3D - 882 991 - -
Ssu3g3010 996 PANTHER BNACNNG61840D PROTEIN 26 995 - -
Ssu3g3010 996 SUPERFAMILY Translation proteins 555 628 IPR009000 -
Ssu3g3010 996 Pfam tRNA synthetases class II (A) 62 630 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Ssu3g3010 996 Gene3D - 541 628 - -
Ssu3g3010 996 Hamap Alanine--tRNA ligase [alaS]. 57 995 IPR023033 GO:0004813
Ssu3g3010 996 Gene3D Bira Bifunctional Protein; Domain 2 58 306 IPR045864 -
Ssu3g3010 996 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 57 802 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Ssu3g3010 996 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Ssu3g3010 996 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166|GO:0005737
Ssu3g3010 996 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166|GO:0005737
Ssu3g3010 996 PRINTS Alanyl-tRNA synthetase signature 135 146 IPR002318 GO:0000166|GO:0005737
Ssu3g3010 996 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3010 Ssu-Chr3 85217485 85230712 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3010 K01872 - gmx:100788271 1765.36