Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2998 ATGGCTTCATCGGCGTGGTTGCCGCAGGAGGCACAGCCACCTGTGCCCGGAGAAACGCCTCTTCCTATGGCTTCTTCCACCCCTAATTCCGCTCCTGCAACTCCTTCTACCGCTGCTCCGGCACTGGCACCGCCATTCGCTTACGGTGTGCTTCCGAATGTTGACGCTTCCGGGAGTTCTCAGCAGTCATCGACACATCCTGCGATAAAATCCAATTCGGCAGCGAATCCCATGGTTGTTCAACCTCCAGTTCCTGGTGTCTCTTCACATGCTGCTCCTccatttttgtataatattccCCAAAGTGGTGCTGCTTTTTCTAGCAACCAGCTGCATGCACAATCTAGCACTAGCATGTCAGATTCTGTTGTGCAGGATGTTAGTAAATTGTCATCTGCATCAAGTATCCCACATTCTGTCCCTGCTCATACTTCTACATCCATAATGCCTCCACCCTCTGACCCTAATTATCGCCCAGCTACTTCATGGATGCCAACTGCCCTGTCTTTTCCTGTGCATCCTGTAAGACCTACTCCCGGGAATCCTGGCCCTCCTGGATTAGCATCATCTGCGATAATATCCTTCAATCCTGCTGCTCCATCCACAGGCACAGATTCGTCCCCAGCTGCATTACTGAGACCAAACATGCCAACTTCAGCCATTGCATCAGATCCTACCGCCCCTCAGAAAGGCTTACCCTATCCATCCATGCCTGCCATGGCTGCTACCCCTCAGGGACTTTGGTTACAGCCACCACAGATGAGTGGTGTACATAGGCCACCGTATCTTCAATACCCAGCTCCTTTTCCTGGTCCCTTTCCATTTCCAGCCCGTGGTGTTGCTCTCCCTGCTGTTCCAATACCTGATTCTCAGCCTCCTGGTGTTACACCTGTGGGTGCTGCTGGCGGCATTTCTACACCTTCTGCTTCCAGTCATCAGCTAAGAGGAACAACTGCTTTGCAAACAGAAGTTATTTCAGGGCCTGTTGATgataagaagaaattaaatgCTGTTGACACTCAGAATGAGGATGCTGCTAATAATGATCAATTAGATGCCTGGACAGCCCACAAGACTGATGCAGGaattatatactattataatGCTGTGACAAGAGAATCAACGTATGATAAACCTGCTGGATTTAAAGGGGAGTCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATgatGAATTTGCCTGGTACTGATTGGCTGTTGGTCTCTACTAgtgatggaaaaaaatattattacaacaATCGAACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGACTGAATTGAAAAAGAAGCAGGATGGTGATGTTACAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGCTCTGGAATGGTTACTCCAAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTCTACAGAGCTCATCATCGGCACTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTGCTTCCTCTTCTATTCCTGCGCCATCAATACAAACAGGATCTGAATCAAATGGTTCAAAAATAGTTGAATCTACAGCTAAGGGCCTGCAAATAGATAATAACAAAGATAAACAAAAAGATACTAATGGTGATGCTAACGTCTCTGATACATCCTCTGATTCTGAAGAGGAAGATACTGGGCCTTCAAAGGAGGAGTGCATCATTCAATTTAAGGAGATGCTCAAGGAGCGAGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAACTGCCCAAGATAGTATTTGATCCACGTTTTAAGGCCATCCCAAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCAGAAGAAGAACGTAAAGAAAAACGTGCTGCACAGAAGGCCACAATTGAAGGATTTAAGCAGTTACTGGATGAAGCCTCAGAGGATATTAATCACAATACTGATTATCAAACTTTTCGGAAGAAATGGGGAAATGATTTGCGGTTTGAGGCATTGGACCGCAAGGAACAAGAGCACCTGTTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGGCTCAAGCAATGCGTGCAGCTGCTGCTGCCAGTTTTAAGTTGATACTTAAAGAGAGGGGAGATCTAACTTTTAACTCCCGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGTTTTGTTCAATGAGTATATATCTGAATTGAAAGCTGCTGAACATGCAGCAGAAAGAGAGATCAAAGCTAAAAGGGAGGAGCAGGACAAGCTGAGGGAAAGAGAACGGGAGCTGCgcaaaaggaaggaaagagaagaacaGGAAATGGAAAGGGTGCGACTAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGACCCTCTgGCATCATGGACGGAATCTAAGCCTAAATTAGAGAAGGATCCTCAAGGACGTGCAACTCATCCCGATCTTGATCCATCTGACACAGAAAAGCTCTTTCGGGAACATGTCAAGATGCTTCAGGAACGTTGTGCACACGAGTTTAGAGTTCTCTTAGCTGAATTATTGACTTCCGAAGCTGCATCTCAAGAAACTGAGGGTGGAAAAACAGTGCTTAATTCTTGGTCTACTGCTAAACGTGCTTTAAAATCTGATCCAAGATATAACAAAGTTccgagaaaagaaagagaagcacTGTGGCGCCGGTATGCAGAGGATATGCTGCGGCGGCAAAAGGCATCTCATGATTCCAGGGAAGAGAAGCATACAGATGCTAAAGGTAGAAATTCTCTAGAATCTTCCAAACATCCATTGGAATCTGGGAGATTGCACGAGCGAAGATAA 2931 0.4377 MASSAWLPQEAQPPVPGETPLPMASSTPNSAPATPSTAAPALAPPFAYGVLPNVDASGSSQQSSTHPAIKSNSAANPMVVQPPVPGVSSHAAPPFLYNIPQSGAAFSSNQLHAQSSTSMSDSVVQDVSKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTALSFPVHPVRPTPGNPGPPGLASSAIISFNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSMPAMAATPQGLWLQPPQMSGVHRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGISTPSASSHQLRGTTALQTEVISGPVDDKKKLNAVDTQNEDAANNDQLDAWTAHKTDAGIIYYYNAVTRESTYDKPAGFKGESHQVSAQPTPVSMMNLPGTDWLLVSTSDGKKYYYNNRTKTSCWQIPNEVTELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTPNAPAINTGGRDAAALKPSSLQSSSSALDLIKKKLQDSGTPVASSSIPAPSIQTGSESNGSKIVESTAKGLQIDNNKDKQKDTNGDANVSDTSSDSEEEDTGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKATIEGFKQLLDEASEDINHNTDYQTFRKKWGNDLRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKLILKERGDLTFNSRWSRVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAEREIKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATHPDLDPSDTEKLFREHVKMLQERCAHEFRVLLAELLTSEAASQETEGGKTVLNSWSTAKRALKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHDSREEKHTDAKGRNSLESSKHPLESGRLHERR 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2998 976 MobiDBLite consensus disorder prediction 506 539 - -
Ssu3g2998 976 CDD WW 404 433 IPR001202 GO:0005515
Ssu3g2998 976 Gene3D - 350 390 - -
Ssu3g2998 976 SUPERFAMILY FF domain 864 941 IPR036517 -
Ssu3g2998 976 MobiDBLite consensus disorder prediction 456 488 - -
Ssu3g2998 976 Gene3D - 391 447 - -
Ssu3g2998 976 Pfam FF domain 876 932 IPR002713 -
Ssu3g2998 976 Pfam FF domain 645 690 IPR002713 -
Ssu3g2998 976 Pfam FF domain 711 759 IPR002713 -
Ssu3g2998 976 Pfam FF domain 579 624 IPR002713 -
Ssu3g2998 976 Pfam FF domain 814 865 IPR002713 -
Ssu3g2998 976 SUPERFAMILY FF domain 632 701 IPR036517 -
Ssu3g2998 976 Gene3D FF domain 636 698 IPR036517 -
Ssu3g2998 976 Gene3D FF domain 699 773 IPR036517 -
Ssu3g2998 976 Gene3D FF domain 558 635 IPR036517 -
Ssu3g2998 976 SUPERFAMILY FF domain 701 767 IPR036517 -
Ssu3g2998 976 MobiDBLite consensus disorder prediction 130 158 - -
Ssu3g2998 976 ProSiteProfiles FF domain profile. 811 868 IPR002713 -
Ssu3g2998 976 ProSitePatterns WW/rsp5/WWP domain signature. 354 379 IPR001202 GO:0005515
Ssu3g2998 976 ProSiteProfiles FF domain profile. 640 695 IPR002713 -
Ssu3g2998 976 MobiDBLite consensus disorder prediction 937 976 - -
Ssu3g2998 976 MobiDBLite consensus disorder prediction 1 86 - -
Ssu3g2998 976 SUPERFAMILY FF domain 804 873 IPR036517 -
Ssu3g2998 976 SUPERFAMILY WW domain 353 383 IPR036020 GO:0005515
Ssu3g2998 976 PANTHER TRANSCRIPTION ELONGATION REGULATOR HOMOLOG 119 976 - -
Ssu3g2998 976 ProSiteProfiles FF domain profile. 708 762 IPR002713 -
Ssu3g2998 976 SMART FF_2 640 695 IPR002713 -
Ssu3g2998 976 SMART FF_2 573 627 IPR002713 -
Ssu3g2998 976 SMART FF_2 811 868 IPR002713 -
Ssu3g2998 976 SMART FF_2 708 762 IPR002713 -
Ssu3g2998 976 CDD WW 354 379 IPR001202 GO:0005515
Ssu3g2998 976 ProSitePatterns WW/rsp5/WWP domain signature. 406 431 IPR001202 GO:0005515
Ssu3g2998 976 ProSiteProfiles WW/rsp5/WWP domain profile. 406 433 IPR001202 GO:0005515
Ssu3g2998 976 Coils Coil 760 815 - -
Ssu3g2998 976 ProSiteProfiles WW/rsp5/WWP domain profile. 348 381 IPR001202 GO:0005515
Ssu3g2998 976 SMART ww_5 401 433 IPR001202 GO:0005515
Ssu3g2998 976 SMART ww_5 349 381 IPR001202 GO:0005515
Ssu3g2998 976 Pfam WW domain 353 379 IPR001202 GO:0005515
Ssu3g2998 976 MobiDBLite consensus disorder prediction 130 151 - -
Ssu3g2998 976 ProSiteProfiles FF domain profile. 573 627 IPR002713 -
Ssu3g2998 976 PANTHER TRANSCRIPTION ELONGATION REGULATOR 1 119 976 IPR045148 GO:0003712|GO:0070063
Ssu3g2998 976 MobiDBLite consensus disorder prediction 54 78 - -
Ssu3g2998 976 MobiDBLite consensus disorder prediction 835 857 - -
Ssu3g2998 976 MobiDBLite consensus disorder prediction 506 573 - -
Ssu3g2998 976 SUPERFAMILY WW domain 405 437 IPR036020 GO:0005515
Ssu3g2998 976 MobiDBLite consensus disorder prediction 22 36 - -
Ssu3g2998 976 Gene3D FF domain 869 935 IPR036517 -
Ssu3g2998 976 Gene3D FF domain 808 868 IPR036517 -
Ssu3g2998 976 SUPERFAMILY FF domain 567 633 IPR036517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2998 Ssu-Chr3 85133817 85146079 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2998 K12824 - gmx:100815386 1597.41