Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2993 ATGATTCTTCAACACGCTTCTTCCACCTCTCACTTCCACCTCTCTCCGCTTTCCCCCTCCCTCTGTCCCTGTAACACCCAACTCAATTCTCTCTCCGCATTATTTCCCTTCTCCAGAAGAAGGAGAAAACGCTTATTCGCCAATTCCGGCTCCCGCAAATTCCGCAGAAAATGCACCGTCCGCTTCTGCGCCATTCCCCCCGACTCTCCCAACCGAAATTGGAACGCCGAATTCGCGAAGCGCGGAACCCGAACCTTCGTTCTCAAACGAATTTCCAACGAACTCGAAGGCGACGACAATACCGAGTTGCAAGCAACATCGCCGCCGGTTCACTTAGGTTCCAACTTCACCGGTTTCCGCGAGGATCCTATAGTGGATAAGCTGAGGACGCAGTTAGGGGTGATACACCCGATCCCCTCCCCTCCGATTAACCGCAACGTCGTTGGTCTTTTCGTCTTCTTTTTCTTCGTCGGTGTCGTGTTCGATAAATTGTGGACTTCGAGGCGGAGGAACAAGAATAGCAGTGAGGACAGGTTGCGTGGCGTGTGGCCGCAGGTGCCGACGAGCTTCTCGCTGTTTCTGGAGAAGGATTTGCAGAGGAAAGAGTCGGTGGAGTGGGTGAACATGGTGTTAGGGAAGTTGTGGAAGGTGTATAGAGGTGCAATTGAGAACTGGATCATAGGGCTGCTGCAGCCTGTGATTGATAACCTGAAGAAGCCTGATTACGTGCAGAGGGTTGAGATTAAGCAGTTCTCGCTAGGGGATGAACCCTTGTCGGTTAGGAATGTTGAGCGCAGGACTTCTCGCAGGGTCAACGATTTGCAGTACCAGATAGGCCTTAGGTATACAGGTGGTGCTCGCATGTTGTTAATGCTTTCTCTGAAATTTGGCATCATTCCAATTGTCGTACCTGTTGGTGTTCGAGATTTTGACATTGATGGCGAACTTTGGGTAAAACTAAGACTAATACCAACAGAACCTTGGGTGGGAGCTGTTTCATGGGCTTTTGTTTCACTTCCAAAGATCAAGTTTGAACTGTCTCCATTCCGTCTATTCAATTTAATGGGTATGTTTTTGACTAAACTTCTCACTGAAGATTTACCTAAACTATTTGTACGCccaaagaaaattgttttagattTCCAAAAGGGAAAAGCGGTTGGTCCAGTTGCTGATGATGTTAAATCTGGAGAAATGCAAGAAGGGAACAAGGATTCTGTGGGTGAACTGTCTGTTACTCTGGTGGATGCTCGAAagctttcttatattttctatGGCAAGACAGATCCTTATGTTACTCTTAGCCTTGGAAATCAAGTTATACGCAGCAAAAAGAACAGTCAAACTACTGTAATTGGCCCCCCCGGAATGCCAATTTGGAATCAGGATTTTCATATGCTTGTTTCCAACCCTAAAAAGCAGAAGCTATTCGTCCAAGTAAAGGACGCTCTAGGATTTGCAGATTTGACTATTGGTACAGGAGAGGTTGATTTGGGATCTCTTAAAGACACTGTACCAACAGACAGAATTGTGGTTTTACATGGAGGTTGGGGATTTTTAGGAAAGCGCTCTTCTGGGGAGATATTACTTCGGCTAACATATAAAGCTTATGTGGAGGACGAGGAAGATGATAAAACTGAGGTGGATACCATTGATACTGATGCTTCTGATGATGAGTTGTCTGATTCAGAAGCAAATGTCACTAGTGAGAAGGATGAAAGAGATTCCATGTATGAAACAGATAAAGAGTCATTTATGGATGTTTTGGCAGCATTAATTGTTAGCGAAGAATTCCAGGGGATTGTAGCATCTGAAACTGGGTTTAGCAAAGTTTTGGATAATGGCTCAAGTGCTGGGTCTAAAGTGTCAAAATCTCCAGTTCCCAAAGCTGGACCAATTCCTTCTAGTTCTGATAATTCTGAAGGCTCTGGAGGGTCAGCTTTATTTTGGCTTGCTGTGATTACTAGCATATCACTACTAATTGCTCTCAATATTGGGGGTTCCAGTCTCTTCAATCCTTAA 2022 0.4476 MILQHASSTSHFHLSPLSPSLCPCNTQLNSLSALFPFSRRRRKRLFANSGSRKFRRKCTVRFCAIPPDSPNRNWNAEFAKRGTRTFVLKRISNELEGDDNTELQATSPPVHLGSNFTGFREDPIVDKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVVFDKLWTSRRRNKNSSEDRLRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGAIENWIIGLLQPVIDNLKKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMGMFLTKLLTEDLPKLFVRPKKIVLDFQKGKAVGPVADDVKSGEMQEGNKDSVGELSVTLVDARKLSYIFYGKTDPYVTLSLGNQVIRSKKNSQTTVIGPPGMPIWNQDFHMLVSNPKKQKLFVQVKDALGFADLTIGTGEVDLGSLKDTVPTDRIVVLHGGWGFLGKRSSGEILLRLTYKAYVEDEEDDKTEVDTIDTDASDDELSDSEANVTSEKDERDSMYETDKESFMDVLAALIVSEEFQGIVASETGFSKVLDNGSSAGSKVSKSPVPKAGPIPSSSDNSEGSGGSALFWLAVITSISLLIALNIGGSSLFNP 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2993 673 MobiDBLite consensus disorder prediction 543 579 - -
Ssu3g2993 673 MobiDBLite consensus disorder prediction 543 563 - -
Ssu3g2993 673 Gene3D C2 domain 388 539 IPR035892 -
Ssu3g2993 673 Pfam C2 domain 408 504 IPR000008 -
Ssu3g2993 673 ProSiteProfiles C2 domain profile. 389 511 IPR000008 -
Ssu3g2993 673 MobiDBLite consensus disorder prediction 616 641 - -
Ssu3g2993 673 SMART C2_3c 409 510 IPR000008 -
Ssu3g2993 673 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 408 536 IPR035892 -
Ssu3g2993 673 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 14 673 - -
Ssu3g2993 673 MobiDBLite consensus disorder prediction 564 579 - -
Ssu3g2993 673 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 200 382 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2993 Ssu-Chr3 85106034 85113275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2993 410 533 Lipid Metabolism Gene Families AT4G20080 29.008 2.70e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2993 - - gmx:100806668 1075.85