Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2992 ATGTCGGATCTTGAGGCTCCCTTGCGCCCAAAGAGGAAGAAGATTTGGGTGGACTATTTTGTTCAGTTTCGATggattattgttatttttgtggTCCTTCCCATTTCCTTcaccatttattttcttacataCCTTGGGGATGTAAGATCTGAGTGGAAGTCCTATAAGACGCGCCAGAAGGAACATGATGAGAATGTGGAGAAGATTATCAAACGTCTCAAACAGAGGAATCCATCGAAGGATGGCCTTGTCTGTACTGCTCGCAAGCCCTGGATTGCTGTTGGCATGCGAAACGTTGACTATAAGAGGGCCCGTCATTTTGAAGTTGACTTGTCTGCTTTCAGGAATATACTTGAGATCGACAAAGAACGGATGACTGCGAGAGTGGAGCCCCTGGTCAACATGGGGCAGATCACCAGGGTGACTGTACCCATGAATCTTGCCCTTGCTGTAGTTGCAGAGCTAGATGATCTCACTGTTGGTGGTCTCATTAACGGCTATGGTATAGAAGGAAGCTCCCACAAATATGGCCTGTTCTCTGATACTGTGGTGGCCTATGAAATTATTTTGGCAGATGGCACTCTTGTTAGAGCCACCAAGGACAATGAGTACTCTGATCTATATTATGCCATTCCATGGTCTCAGGGAACACTCGGCCTTCTTGTTGCTGCTGAGATCAAGCTTATACCCATTAAGGAGTACATGAAGGTAACATACAAACCTGTTGTTGGCAACCTGAGAGATCTTGCACAGGCATATTGTGATTCTTTTGCTCCCAGAGATGGAGACCAGGATAATGATGAGAAGGTTCCGGACTTTGTTGAAGGAATGATTTATACACCAGCAACTGGTGTGATGATGACAGGAAGATATGCTTCAAAAGAAGAGGCCAAGAAGAAGGGGAATAAGATCAACAATGTAGGATGGTGGTTTAAACCCTGGTTCTATCAGCATGCAGAGACGGCACTGAGGAAAGGAGAGTTTGTAGAATACATTCCTACCAGAGAATATTATCACAGGCACACAAGGTGCTTGTACTGGGAGGGAAAGCTTATCCTCCCGTTTGCTGATCAATGGTGGTTTAGGTTTCTGTTTGGCTGGTTGATGCCACCCAAGGTTTCTCTGCTCAAGGCAACTCAAGGTGATGCTATAAGAAACTATTATCATGAAATGCATGTCATCCAGGACATGCTTGTTCCTTTGTACAAGGTGGGAGATGCTTTGGAATGGGTTCACCGTGAGATGGAGGTATACCCCATTTGGCTCTGCCCACACAAATTGTACAAGCTGCCTGTCAAAACTATGGTTTACCCAGAGCCAGGGTTCGAACTACATCGCAGGCAGGGAGACACCCAAACTGCTCAAATGTACACAGATGTTGGAGTCTACTATGCACCAGGTCCTGTTCTTAGGGGTGAGGTATTTAATGGGGCAGAAGCAGTGCGTAAAATGGAGAACTGGTTGATTGAAAATCATGGTTTTCAGCCACAGTATGCTGTGTCTGAGCTGTCTGAGAAAAACTTCTGGAGGATGTTTGATGCTGGTTTATATGAGCATTCTAGAAGGAAGTATGGAGCCGTTGGGACCTTTATGAGTGTATACTACAAATCAAAGAAGGGCAGGAAAACTGAGAAGGAGGTACAAGAAGCAGAACAAGCGCACCTTGAAACTGCATATGCAGAAGTTGATCAGCCAGTAGactga 1704 0.4437 MSDLEAPLRPKRKKIWVDYFVQFRWIIVIFVVLPISFTIYFLTYLGDVRSEWKSYKTRQKEHDENVEKIIKRLKQRNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILEIDKERMTARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHKYGLFSDTVVAYEIILADGTLVRATKDNEYSDLYYAIPWSQGTLGLLVAAEIKLIPIKEYMKVTYKPVVGNLRDLAQAYCDSFAPRDGDQDNDEKVPDFVEGMIYTPATGVMMTGRYASKEEAKKKGNKINNVGWWFKPWFYQHAETALRKGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRFLFGWLMPPKVSLLKATQGDAIRNYYHEMHVIQDMLVPLYKVGDALEWVHREMEVYPIWLCPHKLYKLPVKTMVYPEPGFELHRRQGDTQTAQMYTDVGVYYAPGPVLRGEVFNGAEAVRKMENWLIENHGFQPQYAVSELSEKNFWRMFDAGLYEHSRRKYGAVGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYAEVDQPVD 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2992 567 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, BULB-TYPE LECTIN DOMAIN, FAD-BINDING, TYPE 2-RELATED 1 564 - -
Ssu3g2992 567 ProSiteProfiles PCMH-type FAD-binding domain profile. 45 231 IPR016166 GO:0071949
Ssu3g2992 567 PANTHER 24-DEHYDROCHOLESTEROL REDUCTASE 1 564 IPR040165 -
Ssu3g2992 567 Pfam FAD binding domain 109 198 IPR006094 GO:0050660
Ssu3g2992 567 SUPERFAMILY FAD-binding/transporter-associated domain-like 105 231 IPR036318 GO:0050660
Ssu3g2992 567 Gene3D - 110 231 IPR016169 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2992 K09828 - gmx:100814521 1137.48