Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2988 ATGGCAAGCCATCCTGGAAAACATGCTCCTTCAAATGGTTCTGTCTATGTGTGCAACTTGCCCTATGGGACTGACGAAAATATGCTGGCTGAATATTTCGGCACCATTGGATTAATAAAGAAAGATAAACGTAcagggagaccaaaaatatgGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTAACATATGAGGATCCACATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTCATATAGCTGAGTCAAAAAACAAGGATGACCAAGCATATAATCCAGTAGTAGAACCAGGAGTTGCTGATAATGTTGGTGGACTAGAGGAAACTACCAAGGATGTTAACGATGGTAGTGGAAGAGGTAGAGGTCAAAATGATACTTCAGGCAAAGCGTGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCGTGTAATCGGTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGGACAAGAATCAGGGGGTATTGGCCGGCCAGTAGGTGGAGGACTCTTTGGTCCCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGACTAAATGCAATATTTGCAACACAAATAAACCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAatctaaagaaaaaattccGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGATTTAGTATTTTATACAGGTATATATGCTATTGCTTTGTTTTTTTAG 993 0.432 MASHPGKHAPSNGSVYVCNLPYGTDENMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVHIAESKNKDDQAYNPVVEPGVADNVGGLEETTKDVNDGSGRGRGQNDTSGKAWQQEGDWLCPNTSCSNVNFAFRGACNRCGTARPAGASGISGAGGRGKGRAGQESGGIGRPVGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEDLVFYTGIYAIALFF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2988 330 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Ssu3g2988 330 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 318 - -
Ssu3g2988 330 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Ssu3g2988 330 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Ssu3g2988 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Ssu3g2988 330 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Ssu3g2988 330 Gene3D - 12 95 IPR012677 -
Ssu3g2988 330 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Ssu3g2988 330 SUPERFAMILY Ran binding protein zinc finger-like 143 181 IPR036443 -
Ssu3g2988 330 Gene3D - 146 182 - -
Ssu3g2988 330 Gene3D - 212 243 - -
Ssu3g2988 330 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Ssu3g2988 330 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Ssu3g2988 330 SUPERFAMILY Ran binding protein zinc finger-like 209 243 IPR036443 -
Ssu3g2988 330 CDD RRM_SARFH 15 97 - -
Ssu3g2988 330 MobiDBLite consensus disorder prediction 132 146 - -
Ssu3g2988 330 SMART rrm1_1 14 95 IPR000504 GO:0003723
Ssu3g2988 330 Coils Coil 257 277 - -
Ssu3g2988 330 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 318 - -
Ssu3g2988 330 MobiDBLite consensus disorder prediction 113 146 - -
Ssu3g2988 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Ssu3g2988 330 SMART zf_4 215 239 IPR001876 -
Ssu3g2988 330 SMART zf_4 151 177 IPR001876 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2988 - - gmx:100780819 583.178