Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2984 ATGCCGATGACTTGTGACTTGCAAATCAACATTGATGGTCAACAGATATTCCTTTTGAAAGAGAAGGTCATATCAAAATTCTGTGGAGGGTTGAAGAAAATCTTGAATCATCAAAAGAGAAGAAGTCATGTGAAGGAGTGGGGGATTAGAATCAATGATTTCCCCGGAGGACCAGATGGGTTTGAGTTAGTTTCAAGGTTCTGTTACAACAATGGCAAAATCCAAATCACTGTAGCTAATGTGTCTCTCCTCCACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAGGTATTCAGCAACAATCTCTTGCAACAAACAGAAACTTTTCTTGAGGGAATCTTTTACTGGAAATGGAATGACATACTTGTAAGTCTCAAGAGTTGCCAGCTGTTTTATACATATGCAAAATGTTATGGTCTTTTGGAGAAGATCATTTGTGTCTTGGCAAAGATTGTCCAGAATTCAGATTCAAACCTCCTCACTTCTTCACCTTCAGcatcgtcatcatcatcatcatcagaaAGCAATTCTGCTAAGAGATTCTCTTATGCATCCAAAGCACGCAAAGCATGGTGGTTTGATGATTTGGCAACTTTTCTGCCAAAGATCATTGAGAAACTTTTCCAGACTATTGGAGCATACAAAGCTGATAACAACAGCTTAATCCTCACAAGATTTCTGTTGCATTATCTGAACACAGCTACTCAAACCAGAGTGGTTAATTGCAGAAACAGCATTGAGTATGCTGCTCTTGCAGAAACTGCTGCTTATGGGGTCATATTTGTTGGAAGAATGACCTTTTCTTGCAGAGGCCTTTTTTGGGTATTGAGGATTGTATCTAGGTTTGGGTTGAGTAGAGGCTGCAGAACTGAATTGGAGAAATTGATTGGTGGGGTGCTTGAGCAAGCTACCTTGGATGATCTTCTGGTTTCTGGTTATGATATGGGAGTTTATTATGATGTTAATTTGGTGATAAGATTGGTTAGACTATTTGTTGATATCAATGGCTCTGAAGATGGACTGTCTTTGCAGAAACTGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGGTCTCTAAATTTCTTGGAGTAGCAGAATGCTTGCCGGACTCTGCAAGGGATTGTTATGATGGGGTCTACAAGGCCATTGACATCTATCTTGAGTCTCATCCAATTATCTcatttgaggaaagatcgaggCTGTGTAGATGTCTTAATTACAGCAAACTCAGCTTTGAAGCTAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCAAGGGTTGCAATGCAAGCTCTTATTTCTCAACAATCAAAAATTCCAACAAGTGACTTTGTAAGTGAGAGTCCAAGGATGAACCCTTCCCAAATAGTTCTGTACAATGAAGCCAACAGAGAAAGCTTCTCCCAAGAGAAGAAAGATATGAAACTAAACCTAGAGAGAATGCAATGGGGAGTAATAGAACTGGAGAAACTAAGGAAGGAAATGAACGGTCAGGTGTCAAAGTTGTTTATGCATAATGTCTTGCTTAATCCTGCTCGTGCTTCATCATCGCCAAGATTTTGTTGA 1599 0.3871 MPMTCDLQINIDGQQIFLLKEKVISKFCGGLKKILNHQKRRSHVKEWGIRINDFPGGPDGFELVSRFCYNNGKIQITVANVSLLHCCAVYLGMTEEVFSNNLLQQTETFLEGIFYWKWNDILVSLKSCQLFYTYAKCYGLLEKIICVLAKIVQNSDSNLLTSSPSASSSSSSSESNSAKRFSYASKARKAWWFDDLATFLPKIIEKLFQTIGAYKADNNSLILTRFLLHYLNTATQTRVVNCRNSIEYAALAETAAYGVIFVGRMTFSCRGLFWVLRIVSRFGLSRGCRTELEKLIGGVLEQATLDDLLVSGYDMGVYYDVNLVIRLVRLFVDINGSEDGLSLQKLKRVGRLIDKYLREISPDQNLKVSKFLGVAECLPDSARDCYDGVYKAIDIYLESHPIISFEERSRLCRCLNYSKLSFEASKDLAKNPRIPPRVAMQALISQQSKIPTSDFVSESPRMNPSQIVLYNEANRESFSQEKKDMKLNLERMQWGVIELEKLRKEMNGQVSKLFMHNVLLNPARASSSPRFC 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2984 532 ProSiteProfiles NPH3 domain profile. 190 449 IPR027356 -
Ssu3g2984 532 PANTHER OS12G0117600 PROTEIN 4 506 IPR043454 -
Ssu3g2984 532 SUPERFAMILY POZ domain 3 95 IPR011333 -
Ssu3g2984 532 Pfam NPH3 family 191 425 IPR027356 -
Ssu3g2984 532 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 4 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2984 Ssu-Chr3 84988143 84990961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2984 3 453 EF-hand Containing Proteins AT3G44820 29.234 4.60e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2984 - - gmx:100808259 884.789