Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2979 ATGGCCTGTGAGAGAGAGTTCCAAATGGCTGTCCATCTGACATTTGTCATGATCTGGACAGCCATGTTTGTCCTCAGTGATTGTCCATATCAGGACTTTCTAGACCACTCTGTCTCCATTCTCCAATTCAACCATATAAATGCAATCACCAACTCAATCCCCAACACGTTTTCTTCCACTTCACCACCACTACTTGAGCACCCTACACCCCCACTCTTTCATTCACAACTTGGTGCAACAATGATAGATTCAAACCCACCACTCATGCAACACTATGGGGCACTTGTGAAAAATCCTGGTGAAGCCAAACAGGCTAAAAGTTTTAATGGTCAAAACCATCCTAGTGTGGACGCATGTGACTTACCTTTGATAGACCTTAGTGGCCTTAAAAGTTCTAATGAAAGAGAAAGGATGGCTTGCACTGCAGCAATATGCAAGGCAGCATCAGAATGGGGATTTTTCCAAGTGGTAAACCATGGGATAAGCCATGACTTACTAAGTAAAATGAGGGAAGAACAAGTGAAGTTGTTTGAAGTACCGTTTGAGAAGAAGGTCACTTGTGGGCTTCTAAATAACCCATATAGGTGGGGGACACCTACAGCTACTCGTTCAAATCACTTCTCATGGTCTGAAGCTTTCCACATTCCTCTCACCATGATCTCAGAAGCTGCTTCCTGGGGTGAATTCAGTTCTTTGAGGGAAGCAATAAATGAGTTTGCACCAGCGATGCTAGAAGTATCTAGGTTGTTGGCCAGCATTCTAGCACAAAACTTGGGCTACCCAAAGGATGCAGTTGAAAAACTTTGTGATGCAGGCACATGCTTTCTGCGATTAAATCACTATCCATGCTGCCCAAAATCTAAAGAAGAAATTTACGGATTAGTGCCTCACACTGACAGTGATTTCCTTACAATCCTTTGTCAAGATCAGGTCGGTGGACTCCAACTCATGAAAGATTCCAAATGGGTCGCTGTAAAACCAAACCCAGATGCTCTAATTATTAACATTGGAGACCTCTTCCAGGCCTGGAGTAATGATGAGTACAAAAGCGTGGAGCACAAGGTTGTCGCAAATGACAAAATGGAAAGACACTCCATAGCATACTTCCTATGCCCTTCTTACAGTACTGTCATAAATGGCTGCAAAGGACCTTCTGTATATAGGAAGTTCACTTTTGGAGAATACAGACACCAAATTCAAGAAGATGTCAAGAAGATAGGACACAAAATTGGACTATCAAGATTTCTACTTTAA 1254 0.4258 MACEREFQMAVHLTFVMIWTAMFVLSDCPYQDFLDHSVSILQFNHINAITNSIPNTFSSTSPPLLEHPTPPLFHSQLGATMIDSNPPLMQHYGALVKNPGEAKQAKSFNGQNHPSVDACDLPLIDLSGLKSSNERERMACTAAICKAASEWGFFQVVNHGISHDLLSKMREEQVKLFEVPFEKKVTCGLLNNPYRWGTPTATRSNHFSWSEAFHIPLTMISEAASWGEFSSLREAINEFAPAMLEVSRLLASILAQNLGYPKDAVEKLCDAGTCFLRLNHYPCCPKSKEEIYGLVPHTDSDFLTILCQDQVGGLQLMKDSKWVAVKPNPDALIINIGDLFQAWSNDEYKSVEHKVVANDKMERHSIAYFLCPSYSTVINGCKGPSVYRKFTFGEYRHQIQEDVKKIGHKIGLSRFLL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2979 417 Pfam 2OG-Fe(II) oxygenase superfamily 275 372 IPR044861 -
Ssu3g2979 417 SUPERFAMILY Clavaminate synthase-like 114 400 - -
Ssu3g2979 417 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 270 372 IPR005123 -
Ssu3g2979 417 Gene3D - 91 405 IPR027443 -
Ssu3g2979 417 Pfam non-haem dioxygenase in morphine synthesis N-terminal 121 215 IPR026992 -
Ssu3g2979 417 PANTHER OS02G0630300 PROTEIN 102 409 - -
Ssu3g2979 417 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 102 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2979 Ssu-Chr3 84924183 84927020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2979 115 395 Glycosyltransferase AT5G59530 30.537 3.02e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2979 - - var:108339477 689.878