Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2978 ATGGCAGCAGAGTCAAACGCTGGATTTCACAATGAAGATATAGATTCTGTTTTGAATAGGCATGCAATTTCGTTTCAGCCTGGTGCTATTAACCGCCTGTCCGAGATGGTTCCAATGGGTAATTATTTTGGGTTGAGTAGTTCGTCTGGGATGATATATTCTGGGAATTCAACCATCATTAACAGTAATCCTGTCATGAGTCAAGCTGGTAATTCATCCGGCTCGTCGCTTCTTCTCGATTCGGTCCCGGGGCTGAAGCATGACACAGGGTTGGCTGTTGAGTGGTCTGTTGATGAACAGTACAAATTGGAGGAGGGCCTTGCAAAATATGCTGATGAGCCAAGTATCATGAGGTATATCAAAATTGCTGTCCTGTTGCCAGATAAAACTGTTCGTGATGTTGCATTGAGGTGTAGATGGTTGACAAGAAAGCGAAGGAAATCAGAAGAACACAATCTGGGAAAGAAGGTCAATACCAGAAAGGATAAGCCAGTGGAGTCAGCATCAAAGACAAATTTACATTCAGCTCTGCCCCCAAGCATGGCTACATATTCTCGCATGTCACTCCATAGGGACCAAAGTCAACGGATACCATATGATGGAATTTGTAGTCCTTTGAAGCAACGCATGGAGCAGAATGCTCAAGCTTTTAATCAAATCGCTGCCAATTTGTCTACTTACAAGTTGCAGGATAACATTGACCTCTTTTGCCATACAAGGCACAATATTAATACCATTCTTAATGATATGAGAGAGATGCCTGGCATTATGAGCCAAATGCCGCCACTGCCTGTTACCATTGACGAGGATCTTGCAATTAGTATTTTGCCTAATAGAACATAG 843 0.4282 MAAESNAGFHNEDIDSVLNRHAISFQPGAINRLSEMVPMGNYFGLSSSSGMIYSGNSTIINSNPVMSQAGNSSGSSLLLDSVPGLKHDTGLAVEWSVDEQYKLEEGLAKYADEPSIMRYIKIAVLLPDKTVRDVALRCRWLTRKRRKSEEHNLGKKVNTRKDKPVESASKTNLHSALPPSMATYSRMSLHRDQSQRIPYDGICSPLKQRMEQNAQAFNQIAANLSTYKLQDNIDLFCHTRHNINTILNDMREMPGIMSQMPPLPVTIDEDLAISILPNRT 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2978 280 PANTHER TRANSCRIPTION FACTOR SUPERFAMILY PROTEIN, PUTATIVE-RELATED 1 280 - -
Ssu3g2978 280 PANTHER FINGER CCCH DOMAIN PROTEIN, PUTATIVE (DUF3755)-RELATED 1 280 - -
Ssu3g2978 280 CDD SANT 94 139 IPR001005 -
Ssu3g2978 280 Gene3D - 91 153 - -
Ssu3g2978 280 MobiDBLite consensus disorder prediction 147 168 - -
Ssu3g2978 280 Pfam Protein of unknown function (DUF3755) 226 259 IPR022228 -
Ssu3g2978 280 MobiDBLite consensus disorder prediction 147 178 - -
Ssu3g2978 280 SUPERFAMILY Homeodomain-like 83 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2978 Ssu-Chr3 84912452 84918889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2978 - - gmx:100807371 484.182