Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2975 ATGTTATTGACGGATGAAAGTTTTGAAGCCGAGGCATTATCCTATGATTACACTGCCAGCATTGAATGTTTGGCACAACCACAGAAGCCTCAGTACAACGGAGGAATCATCCAAAACCCAGAACTGAATAATGGACTTCAAGGGTGGACTGCATTTGGAGACGCAAGAATAGAACATAGAGAATCATTGGGCAACAAATATGTGGTAGCCCATAGCAGAAATCAAGCACATGATAGTGTCTCCCAGAAGATTTACTTGCGAAAGGATATGCACTATACTTTATCCGCTTGGATACAAGTGAGTGAGGGAAACGTTCCTGTAACAGCAGTTGTCAAAGCAGCTACAAGATTCAAATTTGCTGGTGCCATTTTTGCTGAGTCTAATTGCTGGTCTATGCTTAAGGGTGGTCTCACAGCGGATACATCAGGACCAGCCGAGCTCTATTTTGAGAGCAATAATACTTCAGTCGAAATTTGGATAGACAGCGTTTCTTTACAACCATTCACAGAGGAGGAATGGAGGTCTCATCAAGCTCAAAGCATTGAGAAGGCTCGTAAGAGGAAGGTGTTAGTCCGAGCAGTTGATGAACAAGGAAATCCTTTACCAAATGCAACCATATCTTTTGTACTGAAGAGGCCAGGCTTTCCGTTTGGCAGTGCCATGAACAGTTACATCCTGAGCAATAGGTTATATCAGAATTGGTTCACCTCCAGATTCACAGTCACCacatttgaaaatgaaatgaagtgGTACAGCAACGAAAACGCGCCAGGCAGGGAAAACTATGCGGCTGCTGATGCCATGTTGCAGTTTGCAAAGCAGCACAACATTGCTGTTCGAGGCCACAACATATTTTGGGACCATCCTCGTTACCAACCTGGTTGGGTTCCCTCACTCTCCCCGTCCCAGCTTAACTCCGCAGTGGAAAGGAGGGTGAGATCTGTTGTGTCAAGATACAGGGGCCAACTTATTTCTTGGGATGTTGTGAATGAGAATCTGCACGTTTCATTCTTCGAAGATAAACTTGGACAAGGTTTTTCAGCCAGGATGTTCAATGAGGCTCACAATATTGATGGACAAACCACTTTGTTCCTGAATGACTATAATACCATTGAGGATAATAGAGATGGTCGAGCAACCCCAACAAGGTACATCCAGAAGATCAGACAGATCCTAAGCTATCCTGGGAATAGGGGATTGCCAATTGGAATTGGGCTCGAGGCCCATTTCCCTAACTCGGGTCTTAACCTTCCTTACATGAGAGCTTCCATTGATTATCTTGCCGCCACTCGTTTGCCAATTTGGATTACAGAAATAGATGTTGAAAGACAACCTAGGCAGACACAGATCTTCGAGCTTGTTCTTAGAGAAGCACACGCCCACCCAATGGTTAGGGGTATTGTGATGTGGACAGCATGGTCACCACAAGGTTGTTATAAGACTTGCTTAGTAGATAGCAATTTCAGGAACTTGCCTGCAGGGAATGTTGTGGACAGGCTGCTTTTTGAGTGGAGGTTAAGCAAATTATCAGGGATTACAGATCAAAATGGGTTCCTTGAGGCCTCTCTTTTCCATGGCGACTATGAAATGGAAATCACTCACCCTGTCAAGAAGAATTACACTTTCACACAGCAGGTGCAAGTGACTCCAACAGATGACtccaagaaaacaaaacaaattgtAAAGCTTTCTATGAAGTAA 1701 0.4333 MLLTDESFEAEALSYDYTASIECLAQPQKPQYNGGIIQNPELNNGLQGWTAFGDARIEHRESLGNKYVVAHSRNQAHDSVSQKIYLRKDMHYTLSAWIQVSEGNVPVTAVVKAATRFKFAGAIFAESNCWSMLKGGLTADTSGPAELYFESNNTSVEIWIDSVSLQPFTEEEWRSHQAQSIEKARKRKVLVRAVDEQGNPLPNATISFVLKRPGFPFGSAMNSYILSNRLYQNWFTSRFTVTTFENEMKWYSNENAPGRENYAAADAMLQFAKQHNIAVRGHNIFWDHPRYQPGWVPSLSPSQLNSAVERRVRSVVSRYRGQLISWDVVNENLHVSFFEDKLGQGFSARMFNEAHNIDGQTTLFLNDYNTIEDNRDGRATPTRYIQKIRQILSYPGNRGLPIGIGLEAHFPNSGLNLPYMRASIDYLAATRLPIWITEIDVERQPRQTQIFELVLREAHAHPMVRGIVMWTAWSPQGCYKTCLVDSNFRNLPAGNVVDRLLFEWRLSKLSGITDQNGFLEASLFHGDYEMEITHPVKKNYTFTQQVQVTPTDDSKKTKQIVKLSMK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2975 566 Pfam Carbohydrate binding domain 36 152 IPR003305 GO:0016798
Ssu3g2975 566 SMART glyco_10 248 501 IPR001000 GO:0004553|GO:0005975
Ssu3g2975 566 SUPERFAMILY (Trans)glycosidases 199 506 IPR017853 -
Ssu3g2975 566 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 203 500 IPR001000 GO:0004553|GO:0005975
Ssu3g2975 566 SUPERFAMILY Galactose-binding domain-like 33 166 IPR008979 -
Ssu3g2975 566 Gene3D Glycosidases 205 508 - -
Ssu3g2975 566 PANTHER GLYCOSYL HYDROLASE 7 543 IPR044846 GO:0004553|GO:0005975
Ssu3g2975 566 Pfam Glycosyl hydrolase family 10 214 493 IPR001000 GO:0004553|GO:0005975
Ssu3g2975 566 Gene3D - 24 168 - -
Ssu3g2975 566 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE 7 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2975 Ssu-Chr3 84890583 84893985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2975 9 558 Glycoside Hydrolase AT4G33840 57.554 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2975 - - gmx:100775272 986.867