Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2968 ATGGATTATGGGGCCGATGGTTTTGATGGCAATGGCGAGGGAGAGAGCAAGAGAGTGGGTGAAGGGGTTTCCGAGGAGAGTATAGCGGGGTCTGATAAATTGAAGGGTTTGGAAGTAGAGGAGGTTTTTCAGGAGGCAATGGAGCCACGGGAGCAAGTCCATGATCAACGATCCAATCTCTATCCCGGAGATGCTGTAGTTGATAAACAGGATGATGCTGATACTGGTAGTGCATTGACTTCAGCTTTGGTGGATGAAAGTCCAGATGCTGCGCAGGAGCTTGACTCCTTTGAGGAGGCTGTTGGGGCTGATACAGAGTCTGGGAAAGTGGGGGAAACTGAGGTAAATGCTAAGCAGGACTTGGAAAGGGTTGGACAGGGAATTGATagtgttcatctggatggtgtTGATTCTGGAGTGCCTGGAGATGGAGAATTTTGTGGCGAGTCCCATGGTATGGGGGGTGATAATCTGGAGAGTACTGATTGGAGTGGTGGAAAGGAAGAATCTGGATTAAGTTCTGATAGAGAGATGTTAGTTAAGGAGAATGATGCTATGGTGGATGGAAACTCTGGTTTGGTGAGTGAGAAGGCTGAAATTGATGATTCTGAATTCATGACTCCTAGAGAAAATGGTGGTATAATATTAGACACTGGAAGGACAGACAAGGTCGATGGTGTTGCTACTGAGGCTATTATGGAATCTGAATCCAGTGAGGTGATTCCAGCCCAAGTTACTGATGCTGGGGATTTGAAGGAGTGTGGCTCAGATCCTGAATTTGGAGATGACAAGATAGAGGTAAAGTCAAATGCTTCAGCTGATCCATCTGGTGAGATTCAAGATGATACATGTGAAGAAGTACACGACAATTCAGTTCACATGAATTTAGAACATCAAGATGAAGTAATTAGGGATATGAAGGATGATTCTCTGGGCACTGATATAAGCCATGAGGACAGAAATGGTGAAGAAATGAGTGTCTGTGGCATTCAGAATACTGAATTAAGAGAGAATGGAAATGAGGATACTGAAGCTGGAAGCTCGTCCTTTTTGGAAAATTCCTCTACTAATGAGACATCCTCTATTCAGGAGGCTAGTGCAGATGATCCAAAGGAAGCAAGTAATAAGGATGATCAATCTCGGATTTCTGATGAAGAGCATAGAGATCATGACAACTCTTCTGTGGTTGAGGAGGCTGAAAGGATACAGGAGGAGATTATGCAACAGACAGAAACCACTCAAGTAACTGGAGAGCAACATGTTCAACCTGCAGCAgatatttcttcttcatctaaAAGCTCTGCTGGTACTGGGCCCCCTCATGTTCCTCCTTCATCTGAAAAATCTGCTGGTGCTGGGCCCCCTCCTGTTCATCCAGCTGGCCTTGGTCGAGCAGCCCCATTGCTGGAACCTGCATCTCGGGTAGTGCAGCAGCCTCGTGCTAATGGTACTGTATCTAATACTCAGTCCCAGCAAATGGAGGACTCCTCAAGTGGAGAGGCTGAGGAGCATGATGAGACACGAGAGAAACTTCAGATGATCAGGGTGAAGTTTTTACGGTTGGCTCATAGGCTTGGGCAAACTCCCCATAATGTTGTTGTAGCTCAAGTTTTATATAGATTAGGACTGGCTGAACAACTCAGAGGAAGGAATGGAGGGCGTGTTGGTGCTTTTAGCTTTGATCGTGCAAGTGCAATGGCTGAGCAGCTTGAAGCAGCAGGTCAGGAGCCACTTGATTTCTCTTGTACAATAATGGTCCTTGGAAAGACGGGAGTTGGTAAAAGTGCTACCATCAATTCTATTTTTGATGAGGTTAAGTTTAATACCAGTGCTTTTCATATGGGAACCAAGAAGGTTCAGGATGTAGTGGGAACAGTGCAGGGCATTAAGGTACGGGTCATTGATACGCCGGGACTTCTACCGTCCTGGTCAGACCAGCGAAGTAATGAGAAGATCCTGCACTCTGTTAAGCACTTTATTAAGAAAACACCACCTGATATTGTGTTGTATCTTGATAGGTTAGATATGCAGAGCAGGGATTTTAGTGATATGCCACTCTTACGCACAATTACAGAAATTTTTGGGCCATCCATTTGGTTCAATGCCATCGTGGTTCTGACTCATGCAGCATCTGCTCCTCCTGAAGGCCCTAATGGTACTGTTTCCAGTTATGACATGTTTGTTACTCAGCGTTCTCATGTTGTGCAGCAAGCCATTCGTCAAGCAGCTGGTGACATGCGTCTCATGAATCCTGTATCATTGGTGGAGAACCACTCTGCTTGCAGAACAAATAGGGCTGGCCAGAGAGTGTTGCCAAATGGCCAGGTTTGGAAACCTCATTTGTTACTTCTATCTTTTGCCTCTAAAATTCTGGCTGAAGCAAATGCTCTTCTCAAGTTACAAGATAGTCCACCTGGGAAGCCTTATACAGCTCGAGCAAGAGCGCCTCCATTACCTTTTCTTTTGTCAACCCTTCTCCAATCAAGGCCGCAATTAAAGTTGCCAGAGGAGCAGTTTGGTGATGAGGACAGTCTTGATGATGACCTTGATGAATCATCAGAGTCTGATGACGAAAATGAACCTGATGACTTGCCACCATTTAAACCTTTAACTAAGGCCCAGGTGGAAAAGCTGTCTAAAGCTCATAAGAAAGCATATTTTGATGAGCTAGAGTATAGAGAAAAGCTTTTCatgaaaaaacaattgaaagaagaaaaaaagcgacggaaaatgatgaagaaaatggCAGAATCAGCAAAGGATCTGCCAAGTGACTATGGTGAaaatgtggaagaagaaagtgGCGGTGCAGCTTCTGTTCCTGTTCCAATGCCAGATTTGGCTCTGCCTGCTTCTTTTGATTCTGATAACCCCACTCATCGATATCGTTATCTTGATTCATCAAACCAGTGGCTTGTAAGACCCGTTCTAGAAACTCACGGATGGGATCATGATGTGGGTTATGAAGGGTTGAATGTTGAAAGATTGTTCGTTCTCAAGGACAAGATCCCTTTATCTTTCACGGGTCAGGTTACTAAGGATAAAAAGGATGCTAATATTCAGATGGAAATAGCCAGTTCAGTTAAGCACGGGGAAGGGAAAGCAACTTCACTAGGTTTTGATATGCAAACTGTGGGGAAGGACTTAGCTTATACATTACGCAGTGAGACAAGATTTACtaattttagaagaaataagGCGACTGCTGGTCTCTCATTTACTTTACTTGGTGATGCCTTATCAGCTGGAATGAAGATTGAAGACAAATTGGTCACTAGTAAGCGATTCAAGCTTGTTATCAGTGGTGGTGCAATGGCAGGGCGTGGTGACATTGCTTATGGTGGCAGTTTGGAGGCCCAATTGAGAGATAAAGATTTTCCTCTTGGTCGTTTCTTATCTACGTTTGGGCTTTCTGTTATGGATTGGCATGGAGATCTTGCTGTTGGGTGCAATGTGCAATCTCAGATCCCAGTTGGACGACATACAAACCTCGTTGCTCGGGCCAATTTGAACAACCGAGGGGCAGGGCAAATAAGCATTCGATTTAATAGTTCAGAACAGCTTCAAATTGCTTTGATTGGTCTCATCCCTCTCCTAAAGAAGCTAGTTGGTTATCCTCAACAATTGCAGTTTggacaatga 3642 0.4311 MDYGADGFDGNGEGESKRVGEGVSEESIAGSDKLKGLEVEEVFQEAMEPREQVHDQRSNLYPGDAVVDKQDDADTGSALTSALVDESPDAAQELDSFEEAVGADTESGKVGETEVNAKQDLERVGQGIDSVHLDGVDSGVPGDGEFCGESHGMGGDNLESTDWSGGKEESGLSSDREMLVKENDAMVDGNSGLVSEKAEIDDSEFMTPRENGGIILDTGRTDKVDGVATEAIMESESSEVIPAQVTDAGDLKECGSDPEFGDDKIEVKSNASADPSGEIQDDTCEEVHDNSVHMNLEHQDEVIRDMKDDSLGTDISHEDRNGEEMSVCGIQNTELRENGNEDTEAGSSSFLENSSTNETSSIQEASADDPKEASNKDDQSRISDEEHRDHDNSSVVEEAERIQEEIMQQTETTQVTGEQHVQPAADISSSSKSSAGTGPPHVPPSSEKSAGAGPPPVHPAGLGRAAPLLEPASRVVQQPRANGTVSNTQSQQMEDSSSGEAEEHDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFNTSAFHMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRSNEKILHSVKHFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPEGPNGTVSSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGKPYTARARAPPLPFLLSTLLQSRPQLKLPEEQFGDEDSLDDDLDESSESDDENEPDDLPPFKPLTKAQVEKLSKAHKKAYFDELEYREKLFMKKQLKEEKKRRKMMKKMAESAKDLPSDYGENVEEESGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGLNVERLFVLKDKIPLSFTGQVTKDKKDANIQMEIASSVKHGEGKATSLGFDMQTVGKDLAYTLRSETRFTNFRRNKATAGLSFTLLGDALSAGMKIEDKLVTSKRFKLVISGGAMAGRGDIAYGGSLEAQLRDKDFPLGRFLSTFGLSVMDWHGDLAVGCNVQSQIPVGRHTNLVARANLNNRGAGQISIRFNSSEQLQIALIGLIPLLKKLVGYPQQLQFGQ 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2968 1213 Coils Coil 902 922 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 840 861 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 198 219 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 1 33 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 481 507 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 136 175 - -
Ssu3g2968 1213 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 412 1208 IPR045058 -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 835 869 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 369 405 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 326 368 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 281 324 - -
Ssu3g2968 1213 CDD Toc34_like 554 799 - -
Ssu3g2968 1213 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 459 1204 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Ssu3g2968 1213 Pfam Translocase of chloroplast 159/132, membrane anchor domain 940 1203 IPR024283 -
Ssu3g2968 1213 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 412 1208 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 406 440 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 249 464 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 252 269 - -
Ssu3g2968 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 716 IPR027417 -
Ssu3g2968 1213 Gene3D - 551 799 IPR027417 -
Ssu3g2968 1213 ProSiteProfiles AIG1-type G domain profile. 579 808 IPR006703 GO:0005525
Ssu3g2968 1213 Pfam AIG1 family 582 716 IPR006703 GO:0005525
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 917 941 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 481 496 - -
Ssu3g2968 1213 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2968 Ssu-Chr3 84837893 84841534 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2968 - - gmx:100810931 1999.94