Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2967 ATGCCAATGCCATCTCCCTCATCCCCAACCCTTAAATCCTCCAACCTCTGCATCGTCAAGCACCTCCTCTCTAACTCTTCCCTCTCCGAAGCCGTTTCTTCTCTCGACCTGTTGCGCCTCAAGGGCATTCGCTTACCCTCTCGCGTTCTCGCCACCCTCTTGCGCCACTGCTCCAAAACCAGGTCTTACCGAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGTTTCAAATGCCCCCCAATGCTTCTGGCCAACCACTTGATCTCCATGTACTTTAGCTGCGGCGATTTCGTTCAGGCACACAAGGTGTTTGACAAAATGGAGGTTAGAAATTTATACACCTGGAACAATATGCTTTCTGGATATGCTAAATTGGGCATGATAAAGCAGGCTAGGAGCTTCTTCTATCGAATGCCTCACAAGGATTATGTATCTTGGAATGCAATGGTGGTTGGGTATGCTCACAGTGGCAGATTTGCTGAGGCTATGAAATTCTATCAACAGTTTAGGAGATTGTCTGTGGGGTATAATGAGTTTAGCTTTGCCAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGAATTTGAACTTTGTAGGCAGATTCATGGGCAGATTTTAGTTGTTGGGTTTTCATCCAATGTGGTTATATCCAGCTTAATTGTTGATGCTTATGCCAAGTGTGGAAAGATGGAAGATGCGAGGAGATTATTTGATGACATGCCTGTGAGGGATGTTCGTGCGTGGACGACATTAGTTTCGGGTTATGCCACGTGGGGGGACATGGAATCGGGTGCTGAATTGTTTAGTCAAATGCCTAAAAGCAATTCCTGTTCGTGGACATATTTGATTAGAGGTTACACTAGAAATGGTATGGGTCATGAAGCACTTGGAGTGTTTAGAGAGATGATCAAGCAGCAAGTTAGACCTGATCAATTTACATTCAATATTTGCCTCTTTGCTTGTGCCACTATTGCTTCACTGAAGCATGGTAAACAAATACATGCGTTTTTGGTGCGAAATAACATCAAACCTAATGCTATTGTTGTTTGTACTATTGTTGACATGTATTCAAAATGTGGAAGCTTAGAAACTGCCATGCGAGTCTTTAATTTTGTTGGGAATAAGCAAGATGTAGTGTTGTGGAACACAATGATATCAGCACTGGCTCACTATGGCTATGGTATAGAAGCAATTATGATGCTAAATAATATGCTAAGATCAGGAGTAAAGCCAAATAAGACCACTTTTGTTGGCATTCTAAATGCTTGTAGTCATTCAGGTCTTGTTCAGGAAGGGCTTCAGTTATTCAAGTCCATGACTAATGAGCATGGTGTCGTCCCTGACCAAGAACACTATGCATGCTTAACTGATCTTTTGGGTCAAGATGGATGTTTTAATGAACCAGGGAAGGATCTGCAGATGATGGATTGTAAGCTAGGTGACCATGTTTGGAACTCTTTGATTGGTGTATGTAGAATGCATGGAAATATAGATCATGGGAGAGAAGTAGCTGTATTCCTTATTAAATTACAGCCACAATCCTCTGCTGCCTACCAATTACTTTCAAGTATATATGCTGCACTTGGGAAATGGGAATTGGTTGAGAAAATAAGACATATTTTGGACGAGAGACAGGTGAGGAAACATCAGGCTATTAGTTGa 1665 0.4234 MPMPSPSSPTLKSSNLCIVKHLLSNSSLSEAVSSLDLLRLKGIRLPSRVLATLLRHCSKTRSYREGKLIHLHLKLTGFKCPPMLLANHLISMYFSCGDFVQAHKVFDKMEVRNLYTWNNMLSGYAKLGMIKQARSFFYRMPHKDYVSWNAMVVGYAHSGRFAEAMKFYQQFRRLSVGYNEFSFASVLIVSVKLKEFELCRQIHGQILVVGFSSNVVISSLIVDAYAKCGKMEDARRLFDDMPVRDVRAWTTLVSGYATWGDMESGAELFSQMPKSNSCSWTYLIRGYTRNGMGHEALGVFREMIKQQVRPDQFTFNICLFACATIASLKHGKQIHAFLVRNNIKPNAIVVCTIVDMYSKCGSLETAMRVFNFVGNKQDVVLWNTMISALAHYGYGIEAIMMLNNMLRSGVKPNKTTFVGILNACSHSGLVQEGLQLFKSMTNEHGVVPDQEHYACLTDLLGQDGCFNEPGKDLQMMDCKLGDHVWNSLIGVCRMHGNIDHGREVAVFLIKLQPQSSAAYQLLSSIYAALGKWELVEKIRHILDERQVRKHQAIS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2967 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Ssu3g2967 554 Gene3D Tetratricopeptide repeat domain 272 375 IPR011990 GO:0005515
Ssu3g2967 554 SUPERFAMILY TPR-like 92 538 IPR011990 GO:0005515
Ssu3g2967 554 Pfam PPR repeat family 276 323 IPR002885 -
Ssu3g2967 554 Pfam PPR repeat family 378 425 IPR002885 -
Ssu3g2967 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Ssu3g2967 554 Gene3D Tetratricopeptide repeat domain 18 176 IPR011990 GO:0005515
Ssu3g2967 554 Gene3D Tetratricopeptide repeat domain 376 553 IPR011990 GO:0005515
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 248 278 IPR002885 -
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 87 114 IPR002885 -
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 115 144 IPR002885 -
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 146 175 IPR002885 -
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 416 449 IPR002885 -
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 221 246 IPR002885 -
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Ssu3g2967 554 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Ssu3g2967 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Ssu3g2967 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 448 IPR002885 -
Ssu3g2967 554 Pfam E motif 495 551 IPR046848 -
Ssu3g2967 554 Gene3D Tetratricopeptide repeat domain 179 271 IPR011990 GO:0005515
Ssu3g2967 554 Pfam PPR repeat 146 174 IPR002885 -
Ssu3g2967 554 Pfam PPR repeat 351 371 IPR002885 -
Ssu3g2967 554 Pfam PPR repeat 219 244 IPR002885 -
Ssu3g2967 554 Pfam PPR repeat 87 113 IPR002885 -
Ssu3g2967 554 Pfam PPR repeat 115 143 IPR002885 -
Ssu3g2967 554 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 14 272 - -
Ssu3g2967 554 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 142 553 - -
Ssu3g2967 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2967 Ssu-Chr3 84813570 84815234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2967 53 554 Glycoside Hydrolase AT3G49170 29.480 9.04e-74 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2967 - - gmx:100798659 923.309