Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2966 ATGGGTTCTCAGGTCTCCAAACAGGTTGAGAGACGAAAGGCAATCCACACAGAGGAAAAAACTCTGTCTGATCTCAGAAACTCTGGGGAAGACTACCCTGGCTCAGATTACCATCCCTCAGACAGGAAAAACTGGATGTCCGAACTCAACCCAGAGAAagttgagataaaaaaaatcgttTGGCCTGGAACCCATGATTCTGCAACCAACAAGATTGGTATCCCATGCATCACTCGCCCTTTTGCTCAATGCCAATCCTTATCCATCTACCGTCAGCTTGTGATGGGGACAAGGGTGATTGACATTCGAGTGCAGGAGAATCGCAGAGTGTGCCATGGAATCCTCCTCACATACAGCATGGACGTTGTCATCAAAGATATCAAGAAGTTCTTATCAGAAACACAGTCCGAGATCATCATCCTtgagGTTAGAACCGAGTTTGGGCACGAGGACCCTCCCGAATTCGACAAGTACCTTCAGGAACAACTGGGGGATTGCCTAGTTCCCCAGGATGAAAACGTTTTTGAGAAGACCATCGCAGAGGTGCTACCAAAGAGAGTTATATGCGTTTGGAAGCCAAGAAAATTGTCACAGCCTCAGACTGGGAGTGCCCTGTGGAGTGCAGGGTATTTGAGGGATAACTGGATCAACACTGATTTGCCATCGACCAAGTTTGAGAGCAACATGAAGCATCTGAGCGAGCAGCAACCTGTGACGTCCAGAAAATACTTCTATAGGGTGGAGAACACCGTTACGCCTGTGCCGGACAACCCCGTTCTGTGCGTGAAGCCTGTCACGGAACGCATTCATGGCTTTGCAAGGCTCTTCATCAGTCAGTGCTTCTCCAAAGGGTATGCAGACAGACTGCAGGTTTTTTCTACGGATTTCATTGACCACGATTTCGTTGATGCATGCGTCGGACTCACACGTGCCAGGGTTGAGGGTAGAGcctga 954 0.4759 MGSQVSKQVERRKAIHTEEKTLSDLRNSGEDYPGSDYHPSDRKNWMSELNPEKVEIKKIVWPGTHDSATNKIGIPCITRPFAQCQSLSIYRQLVMGTRVIDIRVQENRRVCHGILLTYSMDVVIKDIKKFLSETQSEIIILEVRTEFGHEDPPEFDKYLQEQLGDCLVPQDENVFEKTIAEVLPKRVICVWKPRKLSQPQTGSALWSAGYLRDNWINTDLPSTKFESNMKHLSEQQPVTSRKYFYRVENTVTPVPDNPVLCVKPVTERIHGFARLFISQCFSKGYADRLQVFSTDFIDHDFVDACVGLTRARVEGRA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2966 317 SMART plcx_3 62 191 IPR000909 -
Ssu3g2966 317 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 309 IPR017946 GO:0006629|GO:0008081
Ssu3g2966 317 SUPERFAMILY PLC-like phosphodiesterases 41 308 IPR017946 GO:0006629|GO:0008081
Ssu3g2966 317 PANTHER 1-PHOSPHATIDYLINOSITOL PHOSPHODIESTERASE-LIKE PROTEIN 7 314 - -
Ssu3g2966 317 MobiDBLite consensus disorder prediction 1 44 - -
Ssu3g2966 317 CDD PI-PLCXDc_plant 32 312 - -
Ssu3g2966 317 MobiDBLite consensus disorder prediction 9 26 - -
Ssu3g2966 317 Pfam Phosphatidylinositol-specific phospholipase C, X domain 80 174 IPR000909 -
Ssu3g2966 317 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 62 184 - -
Ssu3g2966 317 PANTHER UNCHARACTERIZED 7 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2966 Ssu-Chr3 84810257 84811672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2966 1 317 Acyl Lipid Metabolism Gene Families AT4G38690 73.899 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2966 - - gmx:100789013 603.594