Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2962 atggcatCGGATAAGGTGGTGGAAACTGTAATAGCAGGGAACTACGTGGAAATGGAAACCGAAGGGCAGCCGAAGGACATAAAATCCaggttatcaagcttgttgTGGGATGGTGGTTCTGTTTATGATGCTTGGTTTAGCTGTGCTTCCAACCAGGTGGCTCAAGTGCTGCTTACGTTGCCATACTCATTTTCCCAGCTGGGAATGCTTTCTGGCATACTTTTTCAACTCTTCTACGGTTTACTGGGTAGCTGGACGGCTTACCTCATTAGCATACTCTACGTTGAATACAGAACAagaaaagagagggaaaaagtTAACTTCAGAAACCATGTCATCCAGTGGTTTGAGGTTCTTGACGGGCTCCTCGGGAAACACTGGAGAAACGTTGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAACTGATAGCTTGTGCAAGcaacatatattacataaatgaCAACCTGGACAAGAGGACTTGGACTTACATCTTCGGAGCTTGCTGTGCCACCACTGTCTTTATTCCTTCCTTTCACAACTACAGAATCTGGTCCTTTTGGGCCTCCTCATGA 588 0.4116 MASDKVVETVIAGNYVEMETEGQPKDIKSRLSSLLWDGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVNFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFWASS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2962 195 Pfam Transmembrane amino acid transporter protein 38 193 IPR013057 -
Ssu3g2962 195 PANTHER OS05G0424000 PROTEIN-RELATED 3 192 - -
Ssu3g2962 195 PANTHER AUXIN TRANSPORTER-LIKE PROTEIN 2 3 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2962 Ssu-Chr3 84704464 84705546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2962 4 191 Organic Solute Cotransporters AT2G21050 90.957 5.96e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2962 K13946 - gmx:100812002 392.119