Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2958 ATGGATCCCTTAGCATCCTCATGTTTCACTCTCATTGCTCTCCTACTCCTCACTCCCGCAGGTGTTATGGGTGCCACCTTTTCATTCGTAAACAAATGCGATTACACAGTGTGGCCCGGCATTCTCGCAAATGCCGGTAGCCCACCCCTCGACAGCACCGGCTTCGAGCTCCCCAAAGACACTTCTCGCGCCTTTCAAGCCCCCACCGGCTGGTCCGGTCGATTCTGGGGCCGAACCGGTTGCAATTTCGACGGATCCGGCTCCGGCTCCTGCCTCACCGGCGACTGCGGCTCCGGCCAAGTCGAATGCAATGGCGCCGGAGCCGCCCCGCCGGCCACCCTCGCCGAGTTCACGCTCGGCACCGGAGGCCAAGACTTCTATGACGTCAGCCTCGTCGACGGCTATAATCTGCCCATGATCGTGGAAGGGACCGGCGGGTCGGGTCTGTGCGGCTCCACGGGTTGCACGTCGGATCTGAACCAGCAGTGCCCGGCGGAGTTGAGAGCGTCGGAGGGAAGCGCGTGCAAGAGCGCGTGCGAGGCTTTTGGGAGCCCCGAGTACTGCTGCAGTGGCGCGTATGGGTCTCCGGCGACTTGTAGGCCCTCCATTTACTCGGAGATGTTCAAGGCTGCTTGCCCCAGGTCGTATAGCTACGCATACGATGATGCTACCAGTACGTTTACGTGTACCGGCGCGGATTATACCGTTACCTTCTGCCCATCCTCGCCGAGTCAGAAATCTTCACGAGATCCCACGAGCCCCATGACCTCAACAACATCACAAGGGTCTGCAGGGACAGCGACAGGAACAGGATCCCAAGGGGCAGTGGTATACACGGGTGCGGACACCGGTGTTGGGTATTCAGTTACGGATTCAGGGTCAAGTTCAGGATCCGGAGGAGAGACAATGCTAGCAGATGGGTCATATTTAGCTGGTTTGGCCATGGGAGACTCTCCTAGAAGAACAGTCTCCTCCGCGTTTCTTTGCTCCGCTAGCTTTTTGCTTATTCTCTCCTTGCTTTAG 1023 0.5855 MDPLASSCFTLIALLLLTPAGVMGATFSFVNKCDYTVWPGILANAGSPPLDSTGFELPKDTSRAFQAPTGWSGRFWGRTGCNFDGSGSGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCGSTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDPTSPMTSTTSQGSAGTATGTGSQGAVVYTGADTGVGYSVTDSGSSSGSGGETMLADGSYLAGLAMGDSPRRTVSSAFLCSASFLLILSLL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2958 340 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Ssu3g2958 340 PANTHER OS03G0233200 PROTEIN 12 264 IPR001938 -
Ssu3g2958 340 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Ssu3g2958 340 SMART tha2 27 240 IPR001938 -
Ssu3g2958 340 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Ssu3g2958 340 MobiDBLite consensus disorder prediction 240 270 - -
Ssu3g2958 340 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Ssu3g2958 340 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Ssu3g2958 340 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Ssu3g2958 340 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Ssu3g2958 340 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Ssu3g2958 340 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 12 264 - -
Ssu3g2958 340 Gene3D Thaumatin 25 240 IPR037176 -
Ssu3g2958 340 CDD TLP-PA 26 239 - -
Ssu3g2958 340 Pfam Thaumatin family 31 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2958 Ssu-Chr3 84659668 84663073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2958 9 264 Receptor kinase-like Gene Family AT5G38280 47.037 2.13e-79 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2958 - - gmx:100801173 573.163