Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2955 ATGGGTAATAGCGAGGATCCCAACAACAAAGGCGATTCTGCATCCGAGTCCTCGCCGACACAACCCTTTCTGTCGAAACCCTCGTACCCATCGTCGACTTCTTCGGCAGTGGAAGAAGAATCGGAGTCAAACCAGCAATACCTTCACATCACTTACAATTCAGGTCCTCGCTCCTTCAAGGACCTCCCCTTCCTCATCCTCTTCCTTCTCTTCCCCCTCTCCACCTTCGCCTTCGGCATCTTCGCCATCTTCCACCGGAACACCGACTACTCCTCCGTCTCCTCTTTCACCTACGACGCCGCCACCTCCTCCTGCGTGAACCCTTCTTCCTCCTCCGCTTCCACGTGGCTCTCCCTCGTGGAAGCATCATCTTCTCCGCATTTGGCGAAGGGTCTCACATGGACCCTCGTTATCACCTTCGTCCTCAGCGTCCCCATGTGCTGGGCCCTGCTTCTCTTACTCAAGCATTACACCAAACAGATTGTCTACGCCTCGATTCCCTTCTTCATTGCCATCCCTATCTTCCTCAACGTCTACTGGTTCGTCGCGTGCACCGTCGGGGCCTCGTGCAGCCACGCGTTCCCCCTCGCGTATCGGATTCTGGTGATGGTGTTCGTGTTCTTGGTCATTGGGGTGGTTGTGTGGATCCTGGTGGTGAATTGGCATCGCGTGGAGCTCACCGTGAGCATAATCGGGGTCGCCTCTCACGCGCTTTCCAGGAATTTGAATTTGTTCGGGGTGCTGCCTTGTATGACTATTGGGCTGGTGGTGTATTACGTGCCGATCGTGATTTTCATGGTGTTTGCGAGGTTTAATGGGAAGATTGTGGTGAAGGATTTGGAGGGTGAATATGCTTGTGTATGGAAGGAGGATTCGTGGGTACCCGCTTATTTCGCGTTGGCTATTCTCACTATGCTTTGGTCTGCGGCAGCTATGGTTGAAGCACAGGTTTATGTCATCAGTGGGACTATTGCTAATTGGTATTTCTCCAAGGATTATCAAACTCCTAAGCGGAGTATTCGAACTTCTCTCAGAAATGCTTTTGGTCCTTCTTCTGGCACAATATGTTTGTCAGGATTGCTTATCTTTGTTGTTCGAATTGTGCGTTCCGTGGTTGATAGTGCAAGACAAGCGGATACTCCTGGGTTAGTGAACCTTGTATTACGGTGCTGTGTAAATGCCTTACTGACAGCAGTTGATTTTCTTAACAAGTTTACCATAAACTTTGCTGCAATAACTGGTGAAGCCTACTGCTCTTCTGCAAGGATGACATATGAACTTCTAAGACGAAATCTTCTCTCTGCTGTTTTTGTGGAGACCATCTCATCTCGCCTCCTGGCTGGAATTGTCTTTGTCCTCTCTGCAATATACACAATTGTGGCCTGTGCTATCTTAAAAGCTGGTACCAATCTTGGGGTTGATTCATATTTTGTGGCTGCGATGGCATGGGTGCTACTGATAATAGTGCTGGGTTACCTCGTGCATGTGCTAGACAATGTAATTGACACAATTTATGTCTGCTATGCGATAGACCGGGATAGAGGAGAGGTTTGTAAACAAGACGTCCATGAGGTTTACGTTCACCTACCCATAAGTAGAAGTCTCAGACAGTCTGTTACTACAAGAACTCTTGGTGTGTAA 1641 0.4899 MGNSEDPNNKGDSASESSPTQPFLSKPSYPSSTSSAVEEESESNQQYLHITYNSGPRSFKDLPFLILFLLFPLSTFAFGIFAIFHRNTDYSSVSSFTYDAATSSCVNPSSSSASTWLSLVEASSSPHLAKGLTWTLVITFVLSVPMCWALLLLLKHYTKQIVYASIPFFIAIPIFLNVYWFVACTVGASCSHAFPLAYRILVMVFVFLVIGVVVWILVVNWHRVELTVSIIGVASHALSRNLNLFGVLPCMTIGLVVYYVPIVIFMVFARFNGKIVVKDLEGEYACVWKEDSWVPAYFALAILTMLWSAAAMVEAQVYVISGTIANWYFSKDYQTPKRSIRTSLRNAFGPSSGTICLSGLLIFVVRIVRSVVDSARQADTPGLVNLVLRCCVNALLTAVDFLNKFTINFAAITGEAYCSSARMTYELLRRNLLSAVFVETISSRLLAGIVFVLSAIYTIVACAILKAGTNLGVDSYFVAAMAWVLLIIVLGYLVHVLDNVIDTIYVCYAIDRDRGEVCKQDVHEVYVHLPISRSLRQSVTTRTLGV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2955 546 MobiDBLite consensus disorder prediction 1 40 - -
Ssu3g2955 546 Pfam Plasma-membrane choline transporter 205 513 IPR007603 GO:0022857|GO:0055085
Ssu3g2955 546 PANTHER CTL-LIKE PROTEIN DDB_G0288717 47 527 - -
Ssu3g2955 546 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 47 527 IPR007603 GO:0022857|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2955 - - gmx:100810591 862.448