Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2954 ATGGCAATCTCGGCGAGCCCCTGCTTATATATAGACCCAAGTCCCACTCTTCCTTCAGATTCTCGTCAACCATCTACACTgaataggaagagaaaaaaagtaaggCCGGCTTTGTTCTCCTTCTCTGCTGATAACAATGGCGATGGCGTTCAAAATGTGTTCAAGATCGATGAAAGGTCAAGGCTTGTGACCGTTGATAAGGTGGGTGGTCCCGGTGAGAGCTACGATGATCTCGCTGCCTCCTTGCCCAACGATGATTGTAGATATGCCGTATTCGACTTTGATTTTGTCACCGTTGATAACTGCCGCAAGAGCAAGATCTTCTTCATTGCTTgGTCTCCAACAGCGTCAAGGATAAGAGCAAAGATGCTCTACGCAACATCCAAGGATGGGCTGAGAAGAGCCCTGGATGGAATCAGCTATGAAGTTCAGGCCACCGATCCAACTGAGATGGGATTCGATAATGAAAATTCAAGCCTAACTTGGATTCAGACACATTTGTATACGGCTCTGTCAGCAATTTCCAAAAACCAGCAATTAGGAAACGAAGCTTACGAAGCTCCTGGGGAGGTGAACTGTTGCTGGCGATTGGCATCAAAGCAACATGACAAGCTAAAACCAGGAGGAAGATTGATAGGCGACATATCTTTCTTAGCAGTTCTTGGCACCGCAGTTAGTTATTCAGATAAACAGTTCTTGCAATAA 705 0.444 MAISASPCLYIDPSPTLPSDSRQPSTLNRKRKKVRPALFSFSADNNGDGVQNVFKIDERSRLVTVDKVGGPGESYDDLAASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKMLYATSKDGLRRALDGISYEVQATDPTEMGFDNENSSLTWIQTHLYTALSAISKNQQLGNEAYEAPGEVNCCWRLASKQHDKLKPGGRLIGDISFLAVLGTAVSYSDKQFLQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2954 234 Gene3D Severin 20 164 IPR029006 -
Ssu3g2954 234 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 53 154 - -
Ssu3g2954 234 SMART adf_2 29 161 IPR002108 GO:0003779
Ssu3g2954 234 ProSiteProfiles ADF-H domain profile. 26 161 IPR002108 GO:0003779
Ssu3g2954 234 SUPERFAMILY Actin depolymerizing proteins 35 155 - -
Ssu3g2954 234 CDD ADF_cofilin_like 53 154 IPR017904 GO:0015629|GO:0030042
Ssu3g2954 234 Pfam Cofilin/tropomyosin-type actin-binding protein 53 152 IPR002108 GO:0003779
Ssu3g2954 234 PANTHER COFILIN-RELATED 53 154 IPR017904 GO:0015629|GO:0030042
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2954 Ssu-Chr3 84589469 84592887 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2954 K05765 - gmx:100801857 203.756