Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2951 ATGTTTCAACAAAGTTCATTCTACCCACGAGTCGACTCAACAAACCCAGACGCCGATTCTCCCTTCTCCCACCCTTcaccatcttcttcttcttcttccataCATCCCTCACTTGAGGCAGAGAGTCTCTGCCGGGAAGAGCCAAATACGACGACACAAGCCATGGAAACCGTTCTCGTCACGGTCCCGGGTGCGATTCTGCATCTGATAGAAAAGGATTCGAGCGTGCACCTTGCTTCCGGCGACCTCACCATATCGAGCCTCGGAGAAGGCGACAAAGTGGTGGCGGTTCTCGCTCGCGTCGGCGACCAAGTTCAGTGGCCGTTGGCCAAAGACGTGTCGGCGGTGAAGCTGGACGAGTCGCACTACTTCTTCACGCTGCGGGTCCCAGAGAACGAGTTCGAGGTGTTGAATTACGGGTTGACGGTGGCGGCGAAGGGGCAAGAGAGGGCGCTGGAGGAACTGGACGAGGTTCTGGAGAAGTATAGCTTTCTGTCGAAGGAGAAAGTGAAGGGCGTGGGAGGGTGGGAGGTGTTGGATGGGTCGGTGTCGACGGAGACATCGCCGGAGGAGTTAGAATCAGAAGAGAAGAGGGAAGTGGTGGAGGAGCACTCTGGTGCTTATTGGACTACGTTGGCGCCAAACGTGGAGGATTACAGCGGGCGTTTTGCGAGGTGGATTGCTGCGGGGTCGGGGCAAGTGGTGAGGGGGATATTGTGGGCTGGGGATGTGACTGTGGACAGGTTGAGATGGGGGAATGATTTGTTGAAGAAGAGGTTGGAGTCTGGTTCCCACTCCCAGATTAGTCCACAGGCCTTGCAGAGGATGAAAAGGGTTAAGAAGTTGACCAAGATGTCAGAGAAAGTTGCCACTGGGGTCCTCTCTGGGGTTGTCAAGGTGTCTGGATTCTTCACAAGTTCTGTTGTCAACTCCACAGCGGGAAAGAAGTTCTTCAGCCTTCTTCCAGGGGAAATCGTCCTTGCTACCATGGATGGATTCAATAAGGTCTGTGATGCTGTAGAAGTAGCTGGAAGGAATGTCATGTCCACTTCATCAGTTGTTACCACCGGACTCGTTTCATATAAATATGGAGAGCAAGCAGCTCAGGTTACAAATGAAGGCCTTGATGCTGCAGGGCATGCGATTGGGACTGCTTGGGCTGTGTTCAAACTAAGGAAGGCACTCAATCCGAAGAGTGTGATCAAACCAACAGCACTAGCTAAAGCCGCTGCCGAAGCAAATTCTGCTAAACTGAAGTCTAAGAAATAA 1269 0.5185 MFQQSSFYPRVDSTNPDADSPFSHPSPSSSSSSIHPSLEAESLCREEPNTTTQAMETVLVTVPGAILHLIEKDSSVHLASGDLTISSLGEGDKVVAVLARVGDQVQWPLAKDVSAVKLDESHYFFTLRVPENEFEVLNYGLTVAAKGQERALEELDEVLEKYSFLSKEKVKGVGGWEVLDGSVSTETSPEELESEEKREVVEEHSGAYWTTLAPNVEDYSGRFARWIAAGSGQVVRGILWAGDVTVDRLRWGNDLLKKRLESGSHSQISPQALQRMKRVKKLTKMSEKVATGVLSGVVKVSGFFTSSVVNSTAGKKFFSLLPGEIVLATMDGFNKVCDAVEVAGRNVMSTSSVVTTGLVSYKYGEQAAQVTNEGLDAAGHAIGTAWAVFKLRKALNPKSVIKPTALAKAAAEANSAKLKSKK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2951 422 MobiDBLite consensus disorder prediction 1 48 - -
Ssu3g2951 422 PANTHER SPARTIN 3 421 IPR045036 -
Ssu3g2951 422 PANTHER OS06G0717100 PROTEIN 3 421 - -
Ssu3g2951 422 Coils Coil 148 168 - -
Ssu3g2951 422 Pfam Senescence domain 225 411 IPR009686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2951 Ssu-Chr3 84563061 84564910 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2951 K19366 - gmx:100802385 632.098