Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2943 ATGGGTTTCTTTAGTACCATTTTGGGGTTTTTTGGATTTGGGGTTGGGATTTCGATTGGCCTTGTGGCTGGGTATTTTCTCTTCATCTACTTTCAACCCACCAATGTTAAGGATCCTGAAATCAAGCCATTGGTGGAGCAAGACCAAGAGACTTTGCAACGAATGTTTCCAGAGATTCCACTCTGGATAAAGAATCCGGACTTTGATCGGCTGGACTGGCTGAACAAGTTTTTAGAATATATGTGGCCGTATCTTGATAAGgcaATTTGCAAGACTGTGAAGAACATTGCAAAACCCATTATTGCTGAGCAGAttcctaaatataaaattgattctgTTGAGTTTGAAACACTCACACTGGGGTCTCTGCCGCCTACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTGAAATGGGCCGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGATTGAAAGCAACCGTGCAGGTTGTGGATTTGCAAGTTTTCCTTTTGCCTCGTATTACTTTGAAGCCCTTGGTTCCTAGTTTTCCTTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAGGCTCATAGGGGCTGATCTTATGTCTATTCCGGGCGTCTATAGGATTGTTCAGGAGCTAATCAAAGATCAGGTTGCAAAAATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCTTTGAAGAGGCCCGTTGGAATTTTACATGTAAAGGTTCTGCATGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCTTCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAAGTGCCATCTAAAAAGACTGCTGTGAAGCATAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATTTGACTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTATTGTTTATGACTGGGAGCAGgttgggaaacatgaaaagATGGGTATGAATGTGATCCctttaaaagaagttttccCTGAAGGGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCCAATGATGTCCAAAATGAAAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGACAAGGGGTTTGAAGAGACACAGACAGTTCCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGATGTTGAAGGAAAGTATCACACTAATCCACATGTACGTCTTATTTTCAGAGGGGAGGAGAAAAAAACTAAGCgcattaaaaaaaacagagatCCAAGATGGGAAGATGAGTTCCAATTTATGGTGGAGGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATTGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATTAACGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCATCCAGATAGAGTTGCAGTGGAGAACCTCGCAAGCATGA 1620 0.3957 MGFFSTILGFFGFGVGISIGLVAGYFLFIYFQPTNVKDPEIKPLVEQDQETLQRMFPEIPLWIKNPDFDRLDWLNKFLEYMWPYLDKAICKTVKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLRLIGADLMSIPGVYRIVQELIKDQVAKMYLWPKTLEVQVLDMSKALKRPVGILHVKVLHAMKLKKKDLLGASDPYVKLKLTEDKVPSKKTAVKHKNLNPEWNEEFNLTVKDPDSQVLEIIVYDWEQVGKHEKMGMNVIPLKEVFPEGPKRFTLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLDKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFQFMVEEPPTNDRLHVEVVSTSSRNLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRIQIELQWRTSQA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2943 539 Gene3D C2 domain 256 410 IPR035892 -
Ssu3g2943 539 PRINTS C2 domain signature 326 334 IPR000008 -
Ssu3g2943 539 PRINTS C2 domain signature 304 317 IPR000008 -
Ssu3g2943 539 PRINTS C2 domain signature 277 289 IPR000008 -
Ssu3g2943 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Ssu3g2943 539 CDD C2 262 359 - -
Ssu3g2943 539 Pfam C2 domain 419 520 IPR000008 -
Ssu3g2943 539 Pfam C2 domain 260 359 IPR000008 -
Ssu3g2943 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Ssu3g2943 539 SMART C2_3c 261 361 IPR000008 -
Ssu3g2943 539 SMART C2_3c 419 517 IPR000008 -
Ssu3g2943 539 Gene3D C2 domain 419 537 IPR035892 -
Ssu3g2943 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Ssu3g2943 539 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Ssu3g2943 539 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Ssu3g2943 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Ssu3g2943 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Ssu3g2943 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2943 Ssu-Chr3 84463003 84469453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2943 255 516 Lipid Metabolism Gene Families AT3G61300 28.309 9.66e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2943 - - gmx:100781189 1040.02