Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2942 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCGTCTTCCTCTGGTCCCACCACTCGTTCCAACAAGCGTGCAcgtctttcttcttcttctgcctCCGCTGCCGCCGCATCTGTTTCTTCCGTAAACACTCGTTCCCGTGCATCCAGGACTAAAGAACCCTTGCCTCCTAAAAATCCTCCCCCTATGGATTCTGCTAATGAATCATCCGGTTCCCGCCGCGATCGCCGCAGCAAGGACAATTCTGATaaggggaaagaaaaagaacatgatATCAGGATTAGGGACAGGGATTCAGACAGAGGGCTGGCATTGAATATGGATGGTGGCGGAGATGACGATGATAATGACAGTGAGGGCGGTGTGGGGATTTTGCATCAGAATTTGACGTCTGCGAGTAGTGCACTCCAGGGACTTCTCCGGAAACTTGGTGCGGGTTTGGATGATCTGCTCCCGTCCTCGGCCATGGGTTCTGCATCTTCCTCTCACCAGAGTGGGAGACTGAAAAAAATCCTGTTTGGGTTGCGGGCAGACGGTGAAGAAGGGCGGCAGGTTGAAGCATTGACGCAACTGTGTGAAATGCTTTCAATTGGGACAGAGGAATCACTTAGTACATTCTCTGTTGATTCGTTTGTTCCCGTGCTTGTGGGGTTGTTGAATCACGAGAGCAACGCTGATATCATGCTTCTTGCGGCCAGAGCATTGACCCATCTCTGTGATGTGCTCCCTTCATCTTGTGCCGCTGTTGTGCACTATGGTGCAGTGTCAATCTTCTGTGCGAGGTTGCTCACCATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCTGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTTCTTCAGTACCATGATTCCAAGGTTCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCGTTTGCGTCATCTCCGGACAAATTAGATGAATTGTGCAACCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCTAACAGTAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACACCGACATATACTGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACTTTACTACTTCTCGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCACCAGAGCAGatatttgaGATTGTAAACCTGGCAAATGAGCTTCTGCCCCCGTTGCCACAAGGAACAATTTCTCTCCCTATCATCTCCAATATGTTTTTCAAAGGGCCCGCTGTAAAAAAGTCTCCTGCTGGTAGCTCTGGGAAACAAGAAGACACGAATGGAAATGTTCCTGAGATTTCAGCTCGTGAGAAACTATTAAATGATCGGCCTGAACTACTTAAGCAATTTGCGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACAAATATATCAAGTTTCTTAGCCGGTGTCCTAGCATGGAAAGATCCACATGTTCTGGTTCCTGCCTTGAAAATTGCTGAAATCCTTATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTAGCCGGAAATTCAACCAATATCTCTACACAGGCATCTTCTGCTGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGCAGTGGGAATTCCAATCCTGATGGAAATCCGGTGGACGATCTGAAGGCTCCAGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCTGTGGATATTCCAACAGTAAATTCCAGTATTCGGTTATCTGTTAGTGCAGCTGCTAAAGCTTTTAAAGATAAGTACTTTCCTTCTGATCCTGGGGCTGCTGAAGTGGGTATTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGGTGATGATCAAAGGACTAATGGAAAGGGGAAATCTAAAACTTCTGGATTTGGTCAGGAAGAGTATTTAATTGGGGTCATAGCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGCAGCtttgttgaattatttttcttgtgggTATTTCTCTAAAGATCGACCCTTAGAAACCCACCTTTCCAAGCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCACTACCTTCCTTTACTGAAGATGGGACTGTGGCTCCTATGATTGTCTTGGTCCAGAAACTTCAAAATGCTTTGTCCTCCTTGGAGCGTTTTCCTGTTGTGCTGAGTCATTCATCTAGGTCATCTAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCAGCCCTTCAAGTTGCGGCTTTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTTGTACTGGTTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTATGGTCTCGTATCCAACGAAGTGAATCTGGTCAGAAGTCCACTGTACCTGCTGGGAATTCTGAATCTGGGACAACTCCTGCAGGAGCTGGTGTATCCTCTCCTTCCACTACCCGTCGTCATTCTACTAGATCAAGATCATCTGTTAATATAGGTGATATATCTAGAAAAGAAATAACTCAAGATAAAAGCACAAGCTCTTCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCAGAAGAGGAGACAAGGGGACCTCAAACCAGGAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGATGCTCAAATAAAGCCTGTAAATGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGATGATAtttctgatgatgaagatgatgaccATGAAGATGTGCTGAGGGATGATTCTCTTCCTGTTTGCTCACCTGACAAAGTACATGATGTGAAATTGGGCGACTTGGCTGAGGAGAGTACTGTTGCTCCTGCAACAAGTGATGGTCAGACTAATGCTGCCTCAGGTTCTAGCAGCAAAGCTGGTACAGTCCGGGGATCAGATTCTGCTGATTTTAGGAGTGGCTATACTTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGTATCAGGGGTGGAAGAGATCGACTAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATCTTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAAAGACAGCTTGTGCtagatgaagatgatgatgagaGATTTGGTGGCAGTAGTGACTATGTATCCAGTGACGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGGCAGAGAACCAAACAGATAGGGCTCCTCCTGGAGGTTCAAGCTCTAATGCTTCAAAATCTGGCAAATCTGGGTCTGTATCAAGTTATAGTTCTGAAGCCAAGTTACATCAGACATCTGTATTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAATATATTGGCATTAATGCGGGTGCTAGAGGGTTTGAACCAACTTGCATCTCGTTTGAGGGCCCAAGTGGTTACTGATAGCTTTGCGGAGGGAAAAATTTTGGATTTAGATGAGCTAAGTGTTACCAGCAGTGCTAGGGTTCCTGCAGAGGAATTTATAAGCAGCAAACTTACTCCAAAACTAGCTAGGCAAATACAAGATGCCCTGGCCTTATGCAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTAACTAAAGCATGcccttttttgtttccttttgagACCCGGCGACAGTACTTCTATTCAACTGCCTTTGGGTTATCTCGTGCACTGTATCGCCTTCAACAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGGTCAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTCTCTCGAAATCGCATTTTGGATTCTGCTGCTAAAGTGATGGAGTTGTATTCTAGTCAAAAAGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGTCTGGGTCCCACCCTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAAAGTCATACTTCAAATGTGGAGATCAGTTTCTTCAGAGAAATATCAAATGGAAATTGATggagatgaaaagaaaatgagaagtaGTGAAGGCTCTTTTGCTGGAGATGGGGAACTTGTTCAAGCTCCTCTTGGGCTGTTTCCTCGACCTTGGCCTGCAAATGCTGATGCATCAGAGGGTACCCAATTTCTTAAAGTGATTGAATATTTCCGGCTATTAGGCCGTGTAATGGCTAAAGCTCTCCAAGATGGACGCCTATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGGAAATGTTATACAGAATCTACTGGTGGTAGTTATACCGATACAATTGCTAATTTGCATTTTCGTGGGGCCCCAATTGAAGATCTCCGCTTGGACTTCACACTTCCTGGTTATCCAGAGTACATCTTGAAACCTGGAGATGATATTGTTGATATCAATAATGTAGAGGAATACATATCCATGGTGGTTGAGGCAACTGTTAAGACTGGAATCATGCGTCAAATGGAAGCATTTAAAGCAGGGTTCAATCAGGTTTTTGACATCTcatctttacaaatttttactCCCCAAGAACTGGATTACTTGCTTTGCGGGCGTAGAGAATTGTGGAAGACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATTTACTTGAAATTATGGGAGAATTCACACCAGAGCTGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACAATTGTGAGGAagCTTTCGTCAAGTGCGGCTAATGCTTCATCTAATGGGAACGGGCCTTCAGAGTCAGCAGATGAGGACTTGCCAAGTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 5625 0.4331 METRSRKRAEASSAAPSSSSSGPTTRSNKRARLSSSSASAAAASVSSVNTRSRASRTKEPLPPKNPPPMDSANESSGSRRDRRSKDNSDKGKEKEHDIRIRDRDSDRGLALNMDGGGDDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNADIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPIISNMFFKGPAVKKSPAGSSGKQEDTNGNVPEISAREKLLNDRPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILAGNSTNISTQASSAEKDNDSISGASSRSRRYRRRSGNSNPDGNPVDDLKAPVSVNVGSPPSSVDIPTVNSSIRLSVSAAAKAFKDKYFPSDPGAAEVGITDDLLHLKNLCMKLNAGGDDQRTNGKGKSKTSGFGQEEYLIGVIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPLETHLSKLRQQALTRFKLFIAVALPSFTEDGTVAPMIVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLVDPLASLAAIEEFLWSRIQRSESGQKSTVPAGNSESGTTPAGAGVSSPSTTRRHSTRSRSSVNIGDISRKEITQDKSTSSSKGKGKAVLKPAEEETRGPQTRNATRRRAALDKDAQIKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCSPDKVHDVKLGDLAEESTVAPATSDGQTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDERFGGSSDYVSSDGSRLWGDIYTITYQRAENQTDRAPPGGSSSNASKSGKSGSVSSYSSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALMRVLEGLNQLASRLRAQVVTDSFAEGKILDLDELSVTSSARVPAEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVILQMWRSVSSEKYQMEIDGDEKKMRSSEGSFAGDGELVQAPLGLFPRPWPANADASEGTQFLKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKCYTESTGGSYTDTIANLHFRGAPIEDLRLDFTLPGYPEYILKPGDDIVDINNVEEYISMVVEATVKTGIMRQMEAFKAGFNQVFDISSLQIFTPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPELQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSESADEDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 1116 1148 - -
Ssu3g2942 1874 Gene3D - 181 655 IPR011989 -
Ssu3g2942 1874 SMART arm_5 288 328 IPR000225 GO:0005515
Ssu3g2942 1874 SMART arm_5 331 369 IPR000225 GO:0005515
Ssu3g2942 1874 SMART arm_5 205 246 IPR000225 GO:0005515
Ssu3g2942 1874 Gene3D Hect, E3 ligase catalytic domain 1746 1872 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 948 995 - -
Ssu3g2942 1874 SUPERFAMILY Hect, E3 ligase catalytic domain 1445 1867 IPR035983 GO:0004842
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 948 1100 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 1255 1283 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 649 701 - -
Ssu3g2942 1874 SUPERFAMILY ARM repeat 174 647 IPR016024 -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 1114 1148 - -
Ssu3g2942 1874 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 45 1874 IPR045322 GO:0006511|GO:0061630
Ssu3g2942 1874 ProSiteProfiles HECT domain profile. 1574 1874 IPR000569 GO:0004842
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 75 109 - -
Ssu3g2942 1874 Pfam HECT-domain (ubiquitin-transferase) 1501 1874 IPR000569 GO:0004842
Ssu3g2942 1874 SMART hect_3 1464 1874 IPR000569 GO:0004842
Ssu3g2942 1874 Gene3D Hect, E3 ligase catalytic domains 1393 1636 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 649 665 - -
Ssu3g2942 1874 CDD HECTc 1453 1869 IPR000569 GO:0004842
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 1 128 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 1014 1041 - -
Ssu3g2942 1874 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 45 1874 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 1170 1190 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 10 56 - -
Ssu3g2942 1874 MobiDBLite consensus disorder prediction 1053 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2942 Ssu-Chr3 84410327 84419921 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2942 K10590 - gmx:100783336 3210.24