Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2940 ATGCCCACAAGGGCTTCCTCCTCATTCTGCACATACAATCTCAACATGTCAACTCTCAAAGTTCTTCTGATTACCGTCACTGTTTCATTGGCCATTGCTGCCAGCGCCcatgaagaaaagaagaagactGATGATGAAGACCAGAAGAAAACTGTGACTTATGATGGCAGGTCACTCATTATCGGTGGAAAACGGGAGCTTCTCTTCTCGGGTTCCATCCATTACCCACGAAGCACCCCCGAGATGTGGCCAGACATTCTTGACAAAGCAAGACATGGAGGTTTAAACGTCGTCCAAACTTACATATTTTGGAACATTCATGAGCCTGAGAAAGGCAAGTTCAAATTTGATGTCGACCAGTATGATTTCGTAAAGTTCATTAAGCTTGTTCAAGAGGCAGGAATGTATGTAACCCTCAGGGTCGGGCCTTTCATCCAAGCTGAATGGAATCACGGAGGACTGCCATATTGGCTAAGAGAGATCCCTGGCATCATATTCCGCTCTAACAATGAACCATTTAAGTTGTACATGAAAGAATATGTAACAACTGTTATAGAAAAGTTGAAAAAGGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACGTGCTTATGAAGCGAACGGAAATATGTATGTCCAGTGGGCCGCAAATTTGGCAGTATCATTGGATGCTGGAATTCCATGGATCATGTGCAAGCAGAAGGATGCTCCGGATCCAGTGATTAATGCATGCAATGGAAGGCACTGTGGTGATACCTTCACTGGTCCCAACAAACCTTACAAGCCTTTCTTATGGACTGAAAACTGGACTGCTcaGTATAGAGTGTTTGGGGATCCACCATCCCAAAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGCTTCTTCTCTAAGAATGGGTCTTTGGTCAACTACTATATGTACCATGGTGgaacaaattttggtagaacAAGCTCTGCCTTCTCAACAACTCGATATTATGATGAAGCCCCTCTTGATGAGTTCGGTCTGCAGAGAGAACCAAAATGGAGTCACCTGAGGGACGTGCACAAGGCATTGAACCTATGCAAGAAGCCCCTGTTCACGGGTGTGTCTACCGTCACAAAACTGAGCTTTTTTCATGAGACTATAGTTTATGAGAAGCCAGGAAGTGATTTGTGTGCTGCTTTCCTCACTAACAACCACACCAAAGCACCAACAACCATAAAATTCAGAGGTTTGGACTATTATCTGCCACCACGTTCCATTAGCATCCTCCCTGACTGCAAGACTGTGGTCTTCAACACTCAACAGATTGTTTCACAACATAATTCAAGGAACTTCAAGTTGTCAAAGGAAGCAAACAATAATAAGTGGGAGGTGTTTTCTGAGACGGTTCCAACCACCAAGCAAATTCCACCCAATAACAAGATTCCTAGAGAGCTTTATAGCTTTCTTAAAGACGCCAGCGACTATGCATGGTACACCACCAGCGTGGAATTGGGTCCAGAAGACTTACCAATGAAGAAAGAGATATCCCCCGTTCTTCGTATTATGAGTCTTGGCCATTCATTGCTTGCCTTTGTAAATGGAGAATTCATTGGATCTAGTCATGGAACCCATGAGGAGAAATCCTTTGAATTCCAGAAACCTGTAACCTTCAAGACTGGAGTTAACCAGATAGCTATCTTGGCTTCCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTTCGCTGGACCCAAGTCTATAATCATCCTTGGTCTGAACTCTGGAAAAATTGATCTGACTTCCAATGGTTGGGGTCAAaagGTTGGTATCCAAGGTGAGGAGCTTGACATTTTCACTGAGGAGGGATCAAAGAAAGTAGAATGGAAAGAATCTAAGGGACCTGGACGGGCTGTCTCCTGGTACAAGACAAAGTTTGCAACCCCAGAGGGAGAGGATCCTGTTGCCGTCAGGATGACTGGTATGGGGAAAGGAATGATTTGGGTCAATGGTCAAAGTATTGGTCGTCACTGGATGAGCTACCTCTCTCCTCTTGGAAAGCCTACTCAGTCAGAGTAA 2094 0.4422 MPTRASSSFCTYNLNMSTLKVLLITVTVSLAIAASAHEEKKKTDDEDQKKTVTYDGRSLIIGGKRELLFSGSIHYPRSTPEMWPDILDKARHGGLNVVQTYIFWNIHEPEKGKFKFDVDQYDFVKFIKLVQEAGMYVTLRVGPFIQAEWNHGGLPYWLREIPGIIFRSNNEPFKLYMKEYVTTVIEKLKKEKLFAPQGGPIILAQIENEYNHIQRAYEANGNMYVQWAANLAVSLDAGIPWIMCKQKDAPDPVINACNGRHCGDTFTGPNKPYKPFLWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTSSAFSTTRYYDEAPLDEFGLQREPKWSHLRDVHKALNLCKKPLFTGVSTVTKLSFFHETIVYEKPGSDLCAAFLTNNHTKAPTTIKFRGLDYYLPPRSISILPDCKTVVFNTQQIVSQHNSRNFKLSKEANNNKWEVFSETVPTTKQIPPNNKIPRELYSFLKDASDYAWYTTSVELGPEDLPMKKEISPVLRIMSLGHSLLAFVNGEFIGSSHGTHEEKSFEFQKPVTFKTGVNQIAILASTVGLPDSGAYMEHRFAGPKSIIILGLNSGKIDLTSNGWGQKVGIQGEELDIFTEEGSKKVEWKESKGPGRAVSWYKTKFATPEGEDPVAVRMTGMGKGMIWVNGQSIGRHWMSYLSPLGKPTQSE 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2940 697 Gene3D - 612 695 - -
Ssu3g2940 697 Gene3D Glycosidases 48 369 - -
Ssu3g2940 697 PANTHER BETA-GALACTOSIDASE RELATED 29 697 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 198 210 IPR019801 GO:0004553|GO:0005975
Ssu3g2940 697 Gene3D - 441 586 - -
Ssu3g2940 697 Pfam Glycosyl hydrolases family 35 58 365 IPR031330 -
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 196 211 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 62 79 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 139 158 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 333 349 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 642 656 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 669 685 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 83 101 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 314 329 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 PRINTS Glycosyl hydrolase family 35 signature 277 292 IPR001944 GO:0004553|GO:0005975
Ssu3g2940 697 SUPERFAMILY Galactose-binding domain-like 429 589 IPR008979 -
Ssu3g2940 697 SUPERFAMILY Galactose-binding domain-like 608 689 IPR008979 -
Ssu3g2940 697 Pfam Beta-sandwich domain in beta galactosidase 373 445 IPR041392 -
Ssu3g2940 697 SUPERFAMILY (Trans)glycosidases 50 369 IPR017853 -
Ssu3g2940 697 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 29 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2940 Ssu-Chr3 84382964 84389005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2940 29 697 Glycoside Hydrolase AT2G16730 62.891 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2940 - - gmx:102663614 1175.61