Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2934 ATGGCGGAAGAGTACGAAGATGGCGAGGTTGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTTCTCTCTTGTACGATCTCTTCATTTCTCACCCTCTTCAATGGCCCTCTCTCACCGTTCACTGGCTTCCTTCCTCTCTCCAACCCCACTCCCACCCTTCCTTCAAACTCCACAGACTCCTTCTCGCCACTCACACTGCCCAGGGCGAACCCAACTTCCTCATGCTCGCCGACGCATCCCTCCCCGCCGACACGTCACAGCCCATCGTCGCCACCGATCCCCACAACCCCGTTCTTCCCAAGGTGGAGATTTCCCAAAGGGTTCCTGTTGATGGGGAGGTGAATCGGGCGCGTTGCATGCCGCAGAACCCTAGTGTTGTTGCTGCTAAGACTTGTAATTCCGAGGTTTATGTGTTTGATTTTACGAAGCAGCGTGGGAGTAAGTGTGACCCGGATTTGAGGTTGAGGGGTCATGACAAAGAGGGTTATGGTTTAGCTTGGAGCCATTCCAAGAACGGGTATCTTTTAAGTGGTTCGCATGATCATAAGGTCTGCTTGTGGGATGTGCCTGCTGCTTCTCAGGAGAATGTGCTTGATGCGGTTCATGTTTATGAGGGTCATGAGAGTGTGGTTGAAGATGTGTCCTGGAATTCGAAGGATGAGAATTTGTTTGGGTCCGTTGGAGATGACTGCAAACTGATCATTTGGGACTTGCGGACAAACAAACCCCAACAGTCGATCAAACCACATGAGAAAGAGGTGAACTTTCTTTCGTTTAATCCGTATAATGAATGGATTTTGGCTACAGCATCTTCAGATACCACCGTTGGTCTCTTTGATACACGGAAGCTGGCAGTGCCGCTACATGTTTTAAGTAGCCACACAGATGAAGTATTCCAGGTAGAGTGGGATCCTAATCGTGAGACTGTGTTGGCATCTTCTGGCGCTGACAGAAGGCTGATGGTTTGGGACCTTAACAGGGTTGGTGATGAGCAGATAGAAGGAGATGGTGACGGTGGCCCTCCCGAACTACTGTTCTCTCATGGTGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACAGAAATCAGCCATGGGTTATCTCAAGTGTAGCCGAGGACAATTCTTTCCATGTCTGGCAAATGGCAGAGAGCATTTACAATGATGGAGATGATGACGACATGTGGATGTCCAATGACTAA 1209 0.4905 MAEEYEDGEVEVEEEFSVWKKNTSLLYDLFISHPLQWPSLTVHWLPSSLQPHSHPSFKLHRLLLATHTAQGEPNFLMLADASLPADTSQPIVATDPHNPVLPKVEISQRVPVDGEVNRARCMPQNPSVVAAKTCNSEVYVFDFTKQRGSKCDPDLRLRGHDKEGYGLAWSHSKNGYLLSGSHDHKVCLWDVPAASQENVLDAVHVYEGHESVVEDVSWNSKDENLFGSVGDDCKLIIWDLRTNKPQQSIKPHEKEVNFLSFNPYNEWILATASSDTTVGLFDTRKLAVPLHVLSSHTDEVFQVEWDPNRETVLASSGADRRLMVWDLNRVGDEQIEGDGDGGPPELLFSHGGHKGKISDFSWNRNQPWVISSVAEDNSFHVWQMAESIYNDGDDDDMWMSND 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2934 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 199 IPR001680 GO:0005515
Ssu3g2934 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 244 - -
Ssu3g2934 402 SMART WD40_4 242 282 IPR001680 GO:0005515
Ssu3g2934 402 SMART WD40_4 286 326 IPR001680 GO:0005515
Ssu3g2934 402 SMART WD40_4 343 383 IPR001680 GO:0005515
Ssu3g2934 402 SMART WD40_4 199 239 IPR001680 GO:0005515
Ssu3g2934 402 SMART WD40_4 150 190 IPR001680 GO:0005515
Ssu3g2934 402 SUPERFAMILY WD40 repeat-like 87 384 IPR036322 GO:0005515
Ssu3g2934 402 PRINTS G protein beta WD-40 repeat signature 177 191 IPR020472 -
Ssu3g2934 402 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Ssu3g2934 402 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Ssu3g2934 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 328 IPR001680 GO:0005515
Ssu3g2934 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 191 - -
Ssu3g2934 402 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 2 398 - -
Ssu3g2934 402 Pfam WD domain, G-beta repeat 203 239 IPR001680 GO:0005515
Ssu3g2934 402 Pfam WD domain, G-beta repeat 289 326 IPR001680 GO:0005515
Ssu3g2934 402 Pfam WD domain, G-beta repeat 157 190 IPR001680 GO:0005515
Ssu3g2934 402 Pfam WD domain, G-beta repeat 347 382 IPR001680 GO:0005515
Ssu3g2934 402 Pfam WD domain, G-beta repeat 244 282 IPR001680 GO:0005515
Ssu3g2934 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 328 - -
Ssu3g2934 402 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Ssu3g2934 402 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 84 IPR022052 -
Ssu3g2934 402 PANTHER WD40 REPEAT FAMILY 2 398 - -
Ssu3g2934 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 248 IPR001680 GO:0005515
Ssu3g2934 402 ProSitePatterns Trp-Asp (WD) repeats signature. 177 191 IPR019775 -
Ssu3g2934 402 Gene3D - 2 398 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2934 Ssu-Chr3 84336537 84338975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2934 206 385 Miscellaneous Gene Families AT5G08390 20.556 1.77e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2934 K10752 - gmx:100791834 707.597