Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2932 ATGGCCATTCAAGCGCAGTGGTATCCAAATAATTCTGCTTCTCCATTTTTCAACAATGGTTATTGCGCTGGTGGGCTTATTGACTCTCATGTCAATTTCCAACACAaacatcatcaacaacaacaacagctaTCAGAACAGCATTTGAGAGAGTTATATAATGGGAATTACGGAACTGTTCAGCCAAATCTTCATGTTTATAATTCAAAAGCCACGAATTGTCCTATGTTTGCTGTTCAGCTTGAGAAGCAACGGGAAGAGATTGATCAGTACATCAAATTCCAGAACGAGGAACTGAGATATATGTTGCAAGAGCATGGGAAACAGCACGCGGTAGCattgttgaaaaaaatggaATCTCGCTCACTTCATATCTTAAgggaaaaagatgaagaaattgCGCAAGCTGTAAAGAAAAAGCTAGAGTTGGAAGAGTATTTAAGAAGGCTAGAGGCAGAAAACATTAAGTGGCAGAAAGTGGCTCAAGAGAAAGAAACCATGGCATTGACCCTCTATAAGACTTTGGAGGAAATGACAGAAGGTGGCTACTTTTTGAACAGTGGGGTGGTGGCAAATGATGCAGTGTCCTTTTGTGACGAAACTGGGGAAAAAGAAGATATGCAAGAAGAAGCAACAACGGAAAACCGTGTAGAATGTGGTGGGGTAAGTGAGTTTGAACAGATTAGGGGAGGGGTGATGCTTTGTAAAAGCTGTCATTCTAGGAGCTCGTGCTTTCTGTTTCTCCCATGCAGGCACCTTTCTTCCTGCAAAGTTTGTAACGCTTTCCTCGAGGCTTGCCCCGTTTGCACAACACCAAAGAAGGCTACCATTGAGTTGAGACTTTGA 846 0.3972 MAIQAQWYPNNSASPFFNNGYCAGGLIDSHVNFQHKHHQQQQQLSEQHLRELYNGNYGTVQPNLHVYNSKATNCPMFAVQLEKQREEIDQYIKFQNEELRYMLQEHGKQHAVALLKKMESRSLHILREKDEEIAQAVKKKLELEEYLRRLEAENIKWQKVAQEKETMALTLYKTLEEMTEGGYFLNSGVVANDAVSFCDETGEKEDMQEEATTENRVECGGVSEFEQIRGGVMLCKSCHSRSSCFLFLPCRHLSSCKVCNAFLEACPVCTTPKKATIELRL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2932 281 Gene3D - 104 116 - -
Ssu3g2932 281 Coils Coil 126 167 - -
Ssu3g2932 281 Pfam Zinc finger, C3HC4 type (RING finger) 234 274 - -
Ssu3g2932 281 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 280 IPR017066 -
Ssu3g2932 281 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 280 - -
Ssu3g2932 281 Coils Coil 78 98 - -
Ssu3g2932 281 PIRSF SBP1_RNase_bind 25 281 IPR017066 -
Ssu3g2932 281 Gene3D Death Domain, Fas 117 243 IPR011029 -
Ssu3g2932 281 Gene3D - 244 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2932 Ssu-Chr3 84315819 84316796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2932 K19042 - gmx:100813629 432.18