Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2928 ATGGAAGTTAACCTCTCTCTCAACCACCACCGCGCCCTCACACTGACCTCGGGCACTCCCTCACTCTCCACTCTCCGCACGCACTTCCTCGGTTCCGCCCACGGTCTCAGGCCTCCACCGACGCCAACACTTTCTCGCCTTCGCTCTCGAAACAAACGCAACAACAACTTAGGGCTCCTCCGCTTCCGCTCCCCGCGCTTCGTCTTCAAGGCCTCCTTCCATTCTCACTCCCTCATCGTCGTCGTCGTCATCGTTACTTTATCCGCCGTTTCCTTGCTCCACTTCACTCTCAACAAGAGAAAGAAGTCTCTTAACCAGACACGGGGACATGCAAAATTTGCGTTATCACCGCAAGGAACTAATGTTGGGAACCAGCTCATTGATAGGGAAATTCTTGGTTTCACGGAATTTCAAAGGGAAAACGCGCTGAGTGACATTGGGAAGTTAAAGGATCACCATGGGGAAGACTACCGTGTCTTTGAGGACGAAGAGATCCACCTTCCGTTTTTGAAATCTTCAGTGGTGCATGAAGTGGCCCTCGCGACTGAGACGTCGGAGTCATCTTCTTCTGTTATTGACTCTGGTGTCAGTAGTAACACTTACAAGGTATTGGATGAGTCTTTTTTATCTGTGGCTTTCTCGCCAAGTTCATTACAACCTCTAGAATTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGATAAAGTTGACTCTGATCCCGAGTTGCCTTTGAATGTGGTCAAATCTGAGCATACTGCTTCTTCTGTTTGTGTAAACAATGCACTGGCAACAGTCGATGGGCatactaaagaaaaaattgaagctGGCGCCATCAAGGGTGATGTCTTTTTCGGTGAATCAGTTAGGGAAGGGCTGTACATGTTTTATGCGGATAACAAGTCTGCAACCGGATTCATGACACCACTGAGTAGTTTAAAGTCATTATCTCCCCGTGCttcttttatgaataaaaaaggaTTGTCCTCGGCGATGGGAAATGTCGCACTAAAAGGATCAGGATTGTCTACAGATATTTCTCTACAAAGTGCAGAACATGTCAAAGGAGCAGTTAAAATTTCCAGTCATAATGGCTACCCTCCACAACATGTGAGTAGAAACATGAGGAAAAGCAGCAGCTCGTTAAGAGACAGGGAAAGAAACAATATGGATCACAATAGTAACAAAGTTTTGCCCCAGAATGCTCACTCAATCAAGGTGCATGTTGATCAGAAAAATGATCAAATCACAGTGCATGATGGTCAGAAAAATGATCCTTCAGAGCATCTaagcaaatataataatttgctAAAAGCTGGGAGGTTACATGAATGTGTAGAATTGCTTAAAGATATGGAAACAAAGGGCTTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACATCTGCAAGAAACGAAAGGCTGTTAAAGAAGCTTTTGATTACATTAGGCTTATTCCAAATCCAACTCTGAGTACATTTAATATGCTTATGTCGGTGTGTGCAAGCTCCCAAGATTCAGAAAGGGCTTTCCAAGTTTTGCAGCTTCTTAAGGATGCTCGACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTCGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAATGTTCATACCTACGGGGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTAGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAACGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCCGCTTGTGCCCAATCAGGAGCAGTAGATCGTGCTTTTGATGTGTTAGCAGAAATGGCAGCTGAAACACAGCCCATCGACCCAGATCACATAACTATAGGTTCATTGTTGAAGGCATGCACAAAAGCTGGTCAGGTTGAACAAGCACAAGAAGTGTACAAGATGATACAAAAATATAGCATAAAGGGATGTCCAGAAGTTTACACCATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAGTTTGCTCGAACTGTATACAATGACATGACCCAGAAAGGGATCCTCCCGGATGagATATTTCTGAGTGCACTAATAGATGTTGCTGGACATGCTAAAAAGCTGGATGCTGCCTTTGATGTCATACAAGAAGCCTGTAAAGGAGGAATAAATATCGGAATAATGTCATATAGCTCATTGATGGGTGCCTGTAGCAATGCAGGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAAATCTCTTAAATTGACGATAACAGTTTCAACAATTAATGCCTTGCTCACTGCACTTTGTGATGGAGATCAATTTCAGAAGGCTTTGGAGGTTTTATTTGAAATGAAAGGATTAGGATTGCGTCCAAACAGTATCACATTCTCAATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAAATGCTCCTTTCTCAAGCCAAAACAGATGGTGTAGCCCCTAATCTCATCATGTGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAGGGCTTATCTTGTTGGTGAGCCTGTTTTATCTTTTGACTCAGGACGGCCACAAGTTGATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTGGAACAATTGAAGCTGGTGAAAAACCTACAAGTGAAATATTGTCACAAATTCTGGGATGCCTGCAACTCCCTTATGACACATCTGTGAAAAATAGACTTGTTGAGAACCTAGGAGTAAGTGCAGAAACTTCAAGAAGCTCAAACCTCTGTTCATTAATGGATGGATTTGGTGAATATGATCCTCGTgctttttcaatacttgagGAAGCTGCTTCACATGGAGTTGTTCCATCTGTTTCATTTAAAGTGAGTCCTATTGTTATTGATGCTAAAGAATTGCATGCTTCTACTGCTGAGGTATACCTCATAACTGTTTTGAAAGGTCTCAAGCATCGACTAGCAGCAGGTGCAAGATTGCCCAACATAATCATTTTATTGCATGTAGAGAAAACAGAAGTTTTGTCTCCCAAGGGGGAGAAGATTATTAACCTTGCAGGAAGAGCTGGCCAAGCAGTTGGAGCGTTGTTGAGGAGGCTTCAGATTCCTCACCAGGGTAATGAATCGAATGGGAAGCTTAGAATTAATGGTCTGGCTCTGAAAAAATGGTTTCAGCCGAAACTTGCTTCTCCATTCAGTGTtaatgtgggatctccaacattCAGCGGAAAACCAGGTGATTGGAGCTCATCCCTATCAAGACTGGGCAAAAGTATTAGTCATCAGCAACGAAACATCCGAACTGGCAATCTATCTTTGGACTAA 3381 0.4176 MEVNLSLNHHRALTLTSGTPSLSTLRTHFLGSAHGLRPPPTPTLSRLRSRNKRNNNLGLLRFRSPRFVFKASFHSHSLIVVVVIVTLSAVSLLHFTLNKRKKSLNQTRGHAKFALSPQGTNVGNQLIDREILGFTEFQRENALSDIGKLKDHHGEDYRVFEDEEIHLPFLKSSVVHEVALATETSESSSSVIDSGVSSNTYKVLDESFLSVAFSPSSLQPLEFAEEMAIQVEESQDKVDSDPELPLNVVKSEHTASSVCVNNALATVDGHTKEKIEAGAIKGDVFFGESVREGLYMFYADNKSATGFMTPLSSLKSLSPRASFMNKKGLSSAMGNVALKGSGLSTDISLQSAEHVKGAVKISSHNGYPPQHVSRNMRKSSSSLRDRERNNMDHNSNKVLPQNAHSIKVHVDQKNDQITVHDGQKNDPSEHLSKYNNLLKAGRLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDYIRLIPNPTLSTFNMLMSVCASSQDSERAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHITIGSLLKACTKAGQVEQAQEVYKMIQKYSIKGCPEVYTIAINSCSQTGDWEFARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVIQEACKGGINIGIMSYSSLMGACSNAGNWQKALELYEYLKSLKLTITVSTINALLTALCDGDQFQKALEVLFEMKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSQAKTDGVAPNLIMCRCIIGMCLRRFERAYLVGEPVLSFDSGRPQVDNKWTSLALMVYRGTIEAGEKPTSEILSQILGCLQLPYDTSVKNRLVENLGVSAETSRSSNLCSLMDGFGEYDPRAFSILEEAASHGVVPSVSFKVSPIVIDAKELHASTAEVYLITVLKGLKHRLAAGARLPNIIILLHVEKTEVLSPKGEKIINLAGRAGQAVGALLRRLQIPHQGNESNGKLRINGLALKKWFQPKLASPFSVNVGSPTFSGKPGDWSSSLSRLGKSISHQQRNIRTGNLSLD 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Ssu3g2928 1126 Pfam Pentatricopeptide repeat domain 798 856 IPR002885 -
Ssu3g2928 1126 Gene3D Tetratricopeptide repeat domain 574 738 IPR011990 GO:0005515
Ssu3g2928 1126 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 71 1126 - -
Ssu3g2928 1126 Pfam PPR repeat 437 458 IPR002885 -
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Ssu3g2928 1126 Pfam Pentacotripeptide-repeat region of PRORP 496 628 IPR033443 -
Ssu3g2928 1126 Pfam Pentacotripeptide-repeat region of PRORP 643 785 IPR033443 -
Ssu3g2928 1126 MobiDBLite consensus disorder prediction 378 393 - -
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Ssu3g2928 1126 TIGRFAM PPR: pentatricopeptide repeat domain 673 706 IPR002885 -
Ssu3g2928 1126 TIGRFAM PPR: pentatricopeptide repeat domain 565 598 IPR002885 -
Ssu3g2928 1126 TIGRFAM PPR: pentatricopeptide repeat domain 496 529 IPR002885 -
Ssu3g2928 1126 TIGRFAM PPR: pentatricopeptide repeat domain 743 772 IPR002885 -
Ssu3g2928 1126 TIGRFAM PPR: pentatricopeptide repeat domain 531 564 IPR002885 -
Ssu3g2928 1126 TIGRFAM PPR: pentatricopeptide repeat domain 778 810 IPR002885 -
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Ssu3g2928 1126 MobiDBLite consensus disorder prediction 361 397 - -
Ssu3g2928 1126 Gene3D Tetratricopeptide repeat domain 742 867 IPR011990 GO:0005515
Ssu3g2928 1126 Gene3D Tetratricopeptide repeat domain 458 573 IPR011990 GO:0005515
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Ssu3g2928 1126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2928 505 976 Glycosyltransferase AT1G05670 20.333 1.12e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2928 - - gmx:100814164 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2928 3 84265402 84276224 Ssu3g2928 3 84265402 84276224 ECH