Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2923 ATGACCGACAGCTCATCCTCGAAAAAGCACGGTCAAAATCAGCCTGAATTAAGTGATCCTACCCCCAAATCCCAGCGATTCAAAATGGGCAAATCCGAAGACCACGATAAGAAGAACTTGGGTAAGAAACTCAAAGATCTGGAAATAAGCGTTCCAATAGTGTATGGGAACACAGCATTTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTATATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCGTGCTGTTTTTCAGTTGCATTCTAGTTTCAATAATCCCACACGTGTTGTGGAGTCGCCACCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCACAGTGATGTTTGTGACAAGCCTTTGAACTTATATCATCACTTGAAGTTGTATCCAGAGGATGAAAACAGTTCCATGTCCACAAAGAAGCCTGTTGTTGTGGAGTTTTATGATGAGATAGTTTTCCCTGATCCTTCCGAGGCTTTTTTAGCTCGTGTGCAAGGTCATCCAGCTGTGAATTTGCCAAGATTACCTGCTGGGCTTACCTTGCCTCCTCCCATACCTGTTGAGGATGCAAGTAAAAGGAGGAAAGGTGATACCAAAGATCATTCCTTAAGTCAATGGTTCACAAATTTCTCGGAAGCGGATGAGCTCTTACAGCTTGCAGCAGCTCGTCAGCAGGTTCAAGCTCATATTGCTAAACTCAGACGACAGATAAGCATGATAGATGGACAGCATCAACAGTTTAAATCTTCTTCTGACCAGTAG 822 0.4343 MTDSSSSKKHGQNQPELSDPTPKSQRFKMGKSEDHDKKNLGKKLKDLEISVPIVYGNTAFWLGKKASEYQSHKWTVYVRGATNEDLGTIIKRAVFQLHSSFNNPTRVVESPPFELSESGWGEFEVAITLYFHSDVCDKPLNLYHHLKLYPEDENSSMSTKKPVVVEFYDEIVFPDPSEAFLARVQGHPAVNLPRLPAGLTLPPPIPVEDASKRRKGDTKDHSLSQWFTNFSEADELLQLAAARQQVQAHIAKLRRQISMIDGQHQQFKSSSDQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2923 273 Coils Coil 236 256 - -
Ssu3g2923 273 PANTHER YEATS DOMAIN 16 271 IPR005033 GO:0006355
Ssu3g2923 273 Gene3D YEATS domain 44 196 IPR038704 -
Ssu3g2923 273 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2923 273 CDD YEATS_TFIID14_like 49 180 - -
Ssu3g2923 273 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14B 16 271 - -
Ssu3g2923 273 Pfam YEATS family 71 150 IPR005033 GO:0006355
Ssu3g2923 273 ProSiteProfiles YEATS domain profile. 43 187 IPR005033 GO:0006355
Ssu3g2923 273 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2923 Ssu-Chr3 84100948 84103999 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2923 K11341 - gmx:100790602 514.998