Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2906 ATGGCTCTGAACCTCACACACTCCACACTCCCTCCTCCTTCTTCTTACATTTCTTACTTTCACCCTTCCATTTCACACCAAATTCACTCTCATACTCTTTCAAAACCTTTCTTCCTCTCACACTCCAAAATCTCAACCTCACCACTCTCCAAAACCCTACATCTTTGTGCATCACCATCTAACACCCCCCACCCTTCACCAACCCCCATTTTCCTCCCATATCTCCAACAACCCGAACCAGAAAATCAAGAACAAGAGAGCATAGAAacaatagaagaagaagaagaagaacaaatcCATGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCACTCGGGTTTTCTCCCAAGACCCTGCAAAAGAAGGAAAACTGTCCCTTCAGAAGAACCGTCGCATCTCATGGCATCTTGCTTCTGACACCACCGACCTTGTTGAAGAACCTGAAACgggtttggttgaagagaaggAAGAAACGGTGTCTCAGAAGAAGGGTTTGCCTGAGGGCATTGTGGGGGAGATTGTTCAGCTTGCAAGGAACTTGCCACAGAATCTGACTCTGGAGGAGGCTTTGGTTGAGTACGAAGGAAGGGTTAGTGAGAAAGAGTGTTGGGAGGTTTTGAAAATGCTTGGGGAGGAGCACCTTCTCGTGTGTTGTTTGTATTTCTTTCAGTGGATGAGGTTGCAGGAACCGTCTCTTGTTACACCTCGGGCTTGTACTGTGCTGTTTCCTTTGTTGGGGAAAGCAAGGATGGGTGATAAGTTGATGGTTTTGTTCACAAACTTGCCTTCTAGCAAGGAGTTCAGAGATGTTCATGTTTATAATGCCGCAATTTCAGGCCTTCTTTCTAGTGGCAGGTATGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAGCAGATAATGTTCTTCCAGATCATGTAACGTGTTCTATTATGGTTATCGTTATGAGAAAACTTGGCCATAGTGCAAAAGATGCATGgcaattttttgagaaaatgaaTGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCACTAATAAAGTCATTTTGTGTTGAGGGTTTGATGAGTGAAGCTCTCATCATCCTATCTGAAATGGAGGAGAAAGGTGTTTCGTCAAATGCAATTGTGTACAACACCCTGATGGATGCATATTGTAAATCCAACCGTGCAGAAGAAGCCGAAGGCCTTTTTGTTGAGATGAGAACTAAAGGGATTATGCCCACTGAAGCTACCTTCAACATTCTAATGTATGCATACAGCAGAAAAACGCAACCTGAGATTGTGGAGAAGCTGCTGGTTGAAATGCAGGATGTCGGCTTGAAGCCAAATGCCAAATCCTATACTTGTCTAATCAGTGCATATGGGAAGCAGAAAAATATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAAGAAAGATGGTATTGAACCCACTTCACATTCTTATACAGCTCTGATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCGGCATTTGAAAACATGCAAAGAGAAGATGCATTTAGACGTGCTGGTGACACCCAAACATTGATGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGGAGGAACACGTGTGACATTCAACACTCTTGTTGATGGTTTTGCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATATCTGAATTTGCGAATGTTGGACTGCACCCAACGGTGATGACATACAATATGCTAATGAACGCATATGCCCGAGGAGGGCGACACTCAAAGTTGCCAGAGTTGTTGGAAGAGATGGCAGCTCATAACTTAAAGCCAGATTCTGTAACTTATTCAACTATGATATATGCCTTCCTCCGCGTTCGAGAATTTAGGCAGGCATTTTTTTATCACCAGGAGATGGTCAAGAGTGGGCAGGTGATGGATGTCAATTCTTACCAGAAGCTTAGGGCGATTCTGGATGTCAAAGCTGCAATCAAAAACAGGACGGATAGGAGATCCTTGATTGGTGTAGTTAGAAGTAAGATGGGCGTTGTGAAACCgaagagaaaaaaggatgaGTTATGGAAGTACAGGAAAAGACATGTGAAGAAACGGTAG 2112 0.419 MALNLTHSTLPPPSSYISYFHPSISHQIHSHTLSKPFFLSHSKISTSPLSKTLHLCASPSNTPHPSPTPIFLPYLQQPEPENQEQESIETIEEEEEEQIHDPDDPIYKFFKTRTRVFSQDPAKEGKLSLQKNRRISWHLASDTTDLVEEPETGLVEEKEETVSQKKGLPEGIVGEIVQLARNLPQNLTLEEALVEYEGRVSEKECWEVLKMLGEEHLLVCCLYFFQWMRLQEPSLVTPRACTVLFPLLGKARMGDKLMVLFTNLPSSKEFRDVHVYNAAISGLLSSGRYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSEMEEKGVSSNAIVYNTLMDAYCKSNRAEEAEGLFVEMRTKGIMPTEATFNILMYAYSRKTQPEIVEKLLVEMQDVGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIEPTSHSYTALIHAYSVSGWHEKAYAAFENMQREDAFRRAGDTQTLMKIWKLMRREKVGGTRVTFNTLVDGFAKHGHYKEARDVISEFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVREFRQAFFYHQEMVKSGQVMDVNSYQKLRAILDVKAAIKNRTDRRSLIGVVRSKMGVVKPKRKKDELWKYRKRHVKKR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2906 703 Pfam Pentatricopeptide repeat domain 435 495 IPR002885 -
Ssu3g2906 703 Pfam PPR repeat 349 375 IPR002885 -
Ssu3g2906 703 Pfam PPR repeat 543 567 IPR002885 -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Ssu3g2906 703 Pfam PPR repeat family 271 315 IPR002885 -
Ssu3g2906 703 Pfam PPR repeat family 378 424 IPR002885 -
Ssu3g2906 703 Pfam PPR repeat family 575 622 IPR002885 -
Ssu3g2906 703 Gene3D Tetratricopeptide repeat domain 324 441 IPR011990 GO:0005515
Ssu3g2906 703 Gene3D Tetratricopeptide repeat domain 515 701 IPR011990 GO:0005515
Ssu3g2906 703 PANTHER - 4 701 - -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Ssu3g2906 703 Gene3D Tetratricopeptide repeat domain 172 323 IPR011990 GO:0005515
Ssu3g2906 703 Gene3D Tetratricopeptide repeat domain 442 514 IPR011990 GO:0005515
Ssu3g2906 703 PANTHER OS03G0856100 PROTEIN 4 701 - -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 483 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 543 576 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 416 449 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 275 307 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 579 612 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Ssu3g2906 703 TIGRFAM PPR: pentatricopeptide repeat domain 486 514 IPR002885 -
Ssu3g2906 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2906 Ssu-Chr3 83890085 83892596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2906 274 657 Miscellaneous Gene Families AT4G11690 25.063 8.30e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2906 - - gmx:100775643 1195.65