Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2901 ATGACAAAAATGAAGGTGTCGAGGTTGCTCCATGTTGCGGTGTTTCATGTGGCGTTGATTGGATTGGGGAGCAGCCACGACTACCAAGACGCATTATCGAAGGCCATTCTGTTCTTCGAGGGACAGCGATCGGGTTTCCTGCCACAGGATCAGAGGCTGAACTGGCGAGGGAATTCGGGTCTGAGTGACGGGTGGAACTACAACACGGATCTCACCGGCGGGTACTACGACGCCGGCGACAACGTCAAATTCGGGTTTCCGATGGCGTTCACGACCACAATGCTGGCGTGGAGCGTGCTGGAATTCGGGGACGTCATGCCCCCCAATGAGCTCAGAAACGCCCTCGTCGCAATTCGTTGGGCCACCGATTACTTGCTCAAGACTGTTTCTCAGCCCAATCGGATTTTCGTTCAGGTGGGTGATCCAAGCTCAGACCACGATTGTTGGGAGAGGCCAGAGGACATGGATACATCCAGGACTACATATGCTGTTGATGCACCAAACGCGGCTTCTGATGTCGCCGGTGAAACAGCCGCCGCACTAGCAGCCTCATCGATGGCTTTCCGGTCATCGGACCCCGGTTATTCAGAGACATTGCTTCGAAATGCTATTACTGCCTTTCAATTTGCAGATAACTACAGGGGTGCTTACAGTGACAATGATAATGTTAAGTACGGTGCCTGCCCATATTACTGTGATTTTGATGGCTATCAGGATGAGTTGTTATGGGGAGCCGCATGGCTAAGGAGGGCCACGCAGGACGATAATTTCCTCAACTACATTCAAAGCAATGGCAAAACGCTTGGTGCTGATGACAACATCAATGAATTTGGTTGGGACAACAAGCATGCTGGCCTTAACGTACTTGTCTCCAAGGAAGTCATAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGTCCTCCGCAGAGAGCTTCATTTGCACACTCATACCTGAATCACCAAGCTCACACGTAGAGTACACACCTGGTGGACTTGTGTACAGACCCGGAGGTAGCAACTTGCAACATGCAACTTCAATTGCTTTTCTTGAGTTGGTCTATGCCAATTACCTAACACACACTTCACAAGCCATCAATTGTGGAAATGTCTATGTTAGTGCACAAACACTTCGCCAACATGCTAAGAGGCAAGTTGATTACATTTTGGGTGATAATCCAATGGGATTATCCTACATGGTTGGCTATAGCAACTACTATCCGCAGCGTATTCATCACCGTGGCTCTTCTTTACCCTCGATCAAGGATCATCCCCAGTTCATTGCATGCAAAGAAGGTTCAATCTACTACAACTCAACGAATCCCAATCCCAATGTACTTGTGGGTGCCATTGTTGGAGGACCTGACGAAAATGATGATTATGAGGATGATCGAGTTGATTTTAGGAAATCCGAGCCAACCACATACATTAACGCACCATTTGTTGGGGTTTTAGCATATTTTGCTGCTAATCCCAactttagttaa 1485 0.4801 MTKMKVSRLLHVAVFHVALIGLGSSHDYQDALSKAILFFEGQRSGFLPQDQRLNWRGNSGLSDGWNYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDVMPPNELRNALVAIRWATDYLLKTVSQPNRIFVQVGDPSSDHDCWERPEDMDTSRTTYAVDAPNAASDVAGETAAALAASSMAFRSSDPGYSETLLRNAITAFQFADNYRGAYSDNDNVKYGACPYYCDFDGYQDELLWGAAWLRRATQDDNFLNYIQSNGKTLGADDNINEFGWDNKHAGLNVLVSKEVIEGNMYSLESYKSSAESFICTLIPESPSSHVEYTPGGLVYRPGGSNLQHATSIAFLELVYANYLTHTSQAINCGNVYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRGSSLPSIKDHPQFIACKEGSIYYNSTNPNPNVLVGAIVGGPDENDDYEDDRVDFRKSEPTTYINAPFVGVLAYFAANPNFS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2901 494 PANTHER ENDO-1,4-BETA-GLUCANASE 8 493 - -
Ssu3g2901 494 Pfam Glycosyl hydrolase family 9 28 484 IPR001701 GO:0004553|GO:0005975
Ssu3g2901 494 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 387 413 IPR018221 -
Ssu3g2901 494 PANTHER ENDOGLUCANASE 24 8 493 - -
Ssu3g2901 494 Gene3D - 24 490 IPR012341 GO:0005975
Ssu3g2901 494 SUPERFAMILY Six-hairpin glycosidases 10 489 IPR008928 GO:0005975
Ssu3g2901 494 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 460 478 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2901 Ssu-Chr3 83867770 83874217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2901 9 490 Glycoside Hydrolase AT1G70710 59.959 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2901 K01179 - gmx:100101849 949.503