Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2893 ATGTGGAGTCAAATGAAGGAAATAGTGACGTTTACAGGGCCAGCGATGGGACTTTGGTTATGTGACCCGCTCATGAGTCTCATCGATACTGCAGTTGTTGGTCAGGGAAGCTCAACTGAGCTTGCTGCCTTAGGTCCAGCTACGGTTGTTTGCGATTACATGACCTACACGTTCATGTTTCTTTCAGTTGTTACTTCCAATATGATTGCTACTACCCTTGCTAAAcagGATAGAGAGGATGTGCAGCATCACATATCTGTCTTGCTATTTGTTGGGTTGGCATGTGGCGGCGTGATGCTTTTGTCCACAAGGTTATTTGGTGCAGCAACACTCGCTGCTTTTACTGGCCCAAAGAATGCACAAGTAGTACCAGCAGCTAATACTTATGTTCAGATTCGAGCCTTGGCGTGGCCTGCTTTACTCGTTGGATGGGTTGCTCAAAGTGCAAGTCTTAGTATGAAAGATTCCTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTGTTATAAGTGTAGTTGGTGATATAGTTTTGTGCAGCTATTTAGGCTATGGTATTGCCGGGGCCGCATGGTCTACAATGGCATCACAAGTTGTTGCTGCGTATATGATGATTCAAACTCTAAACAACAAGGGATACAATGGGTTTGCCTTTTCCATTCCTTCAGGGAAGGAATTTCTGGCAATACTTGGTCTCGCTGCCCCCGTATATGTCACGTCCATATCAAAGGTGGCTTTCTTCTCTCTACTTATATATGTTGCTACATCGATGGGTACACAAACAATGGCTGCTCATCAAGTCATGATTCAAATCTACATGGCGTGTACAGTATGGGGCGAGCCTCTATGCCAAACTGCTCAATCATTTATGCCTGAGTTTACGTATGGAGTAAATCGGAGTTTGGCAAAGGCCCGGTTGCTGTTAAGGTCTCTAGTATTTATTGGAGCTACACTTGGATTGTTGTTAGGGATTGTTGGTACATCTATTCTTTGGTTATTCCCCTACATTTTTACATCTGATCAGATAGTCATCCAGAAGATGCATAGGACACTGATTCCATTCTTTGTAGCGCTATCTGTGACACCTCCTACTCGCAGCCTGGAGGGAACATTGCTGGCTGGACAGGATCTGAAATATATAAGTTTGTCAACAAGTGGATGCTTTTTTCTGGGTGCTCTGGTATTATTGATCTCTAGTAGATATGGTTTGCAAGGCTGTTGGTTTACCCTTGCTGGATTTCAGTGGGCTCGGTTTTCAGTTGCCCTTCTGCGCCTTATCTCTCCTAATGGCATTTTCTACAAGGAAGAGGCTAGTATGAGGCTATGA 1323 0.446 MWSQMKEIVTFTGPAMGLWLCDPLMSLIDTAVVGQGSSTELAALGPATVVCDYMTYTFMFLSVVTSNMIATTLAKQDREDVQHHISVLLFVGLACGGVMLLSTRLFGAATLAAFTGPKNAQVVPAANTYVQIRALAWPALLVGWVAQSASLSMKDSWGPLKALAAASVISVVGDIVLCSYLGYGIAGAAWSTMASQVVAAYMMIQTLNNKGYNGFAFSIPSGKEFLAILGLAAPVYVTSISKVAFFSLLIYVATSMGTQTMAAHQVMIQIYMACTVWGEPLCQTAQSFMPEFTYGVNRSLAKARLLLRSLVFIGATLGLLLGIVGTSILWLFPYIFTSDQIVIQKMHRTLIPFFVALSVTPPTRSLEGTLLAGQDLKYISLSTSGCFFLGALVLLISSRYGLQGCWFTLAGFQWARFSVALLRLISPNGIFYKEEASMRL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2893 440 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 1 434 - -
Ssu3g2893 440 Pfam MatE 20 174 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g2893 440 CDD MATE_DinF_like 4 424 IPR044644 -
Ssu3g2893 440 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 1 434 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2893 Ssu-Chr3 83711370 83717502 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2893 K03327 - mtr:MTR_4g071390 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2893 3 83711370 83717502 Ssu3g2893 3 83711370 83717502 ECH