Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2888 ATGGTGCCTCTAAACCCAGAAGCCCCAGAATTTTTTCCCAGCCAACACCACAAGCTTCAGCAAGTGCAACAACCCCTTCCCTGCCCCAATTTCACCACTCCCATATTCACTCCTCCCCACCACTGCTACTTCgttctctcttcctttccctCCCGAGAGCTTCCCCCTCTCTATTATCCCACCACACAGCTTTCACCACCTTCCGTACCCTTTCACGACGCCACCGTAACGAGCCCTGTGGGACCCGAAGCCGAACCAACTCGTTTTCATAACTTCACAGTTGGCCCTAACCCCGCGGAAGCCCATGCAGTGCACCAGAAGAAAGAGGAAGTGGTGTCCGGGTCCAAATCGGGTGGTTCGAAAGGGATCGTGCAGAAGCAAGTGCTGAAGGCTTTCATAAGTTGCGGAACGCTTGATGGTCGTCGTTCGGATGGTTTGAGAGTGAAGGCATACGCGCGGAGAAGGAAGGTGGAGGGAGAAGAAAATAGTCAACGCAAGAAGTTTGACTGTTTAAGGAACCGAAATGTTTTAAGGTATCCACATGAACAGTGCTTCAGGGGTTTCCCTAAGAAGAAACGTTGTTATCCTCTCTTGCCAGTAAGAGTAGACGGAGAAGAAACCACCGTCATGATCAGAAACATCCCTAGCAAATACACCCGTGATATGCTGGTGGAGTTTCTGGACGATCATTGTTTACAAGTGAATCTACGAGACAAAGAAGCTGGCAAAGAGGAAGGCGAAGAACAACCCAGTGCTTTAGCTTTTGATTTCGTTTATTTGCCTATTGATTTTAAAAGTGGGTTGAACAAGGGTTACGCGTTTGTTAACTTCACCAAACCCCAGGCAGCTTGGAAATTTCTTTTGACAGCGTCCAATATGAAATGGGGCTTGTTCCAGTCCCACAAGATACGTGAAGTGGTTTCTGCACGTTTACAGGGAAAGGAGAAATTGCAGAAGCACTTTGAAAGTATGAACTTTCCCTGTGAGTCTGAGGATGTTCTGCCCGTGTGCTTTAGCCCACCCCGCGATGGTGTAATTAAGGGAGAGCAAAGGACTGTGGGGAAACTTATCAAGCGTCAACAAGTTTGA 1089 0.4757 MVPLNPEAPEFFPSQHHKLQQVQQPLPCPNFTTPIFTPPHHCYFVLSSFPSRELPPLYYPTTQLSPPSVPFHDATVTSPVGPEAEPTRFHNFTVGPNPAEAHAVHQKKEEVVSGSKSGGSKGIVQKQVLKAFISCGTLDGRRSDGLRVKAYARRRKVEGEENSQRKKFDCLRNRNVLRYPHEQCFRGFPKKKRCYPLLPVRVDGEETTVMIRNIPSKYTRDMLVEFLDDHCLQVNLRDKEAGKEEGEEQPSALAFDFVYLPIDFKSGLNKGYAFVNFTKPQAAWKFLLTASNMKWGLFQSHKIREVVSARLQGKEKLQKHFESMNFPCESEDVLPVCFSPPRDGVIKGEQRTVGKLIKRQQV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2888 362 PANTHER MEI2 C-TERMINAL RRM ONLY LIKE 2 38 347 - -
Ssu3g2888 362 Pfam RNA recognition motif 2 254 321 IPR007201 -
Ssu3g2888 362 Gene3D - 139 319 IPR012677 -
Ssu3g2888 362 PANTHER RNA BINDING PROTEIN 38 347 - -
Ssu3g2888 362 SUPERFAMILY RNA-binding domain, RBD 174 295 IPR035979 GO:0003676
Ssu3g2888 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 310 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2888 Ssu-Chr3 83679509 83681836 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2888 - - vun:114170421 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2888 3 83679509 83681836 Ssu3g2888 3 83679509 83681836 ECH