Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2886 ATGATAAACATTGCAGGAACCGTGTTTGCATATGGTGTGACCAGTAGTGGTAAGACACATACTATGCATGGGGATCAAAATTCTCCTGGTATCATACCGCTTGCTATAAAAGATGTTTTTGGCATTATCCAAGATACTCCAGGAAGAGAGTTCTTACTCCGAGTGTCATATCTAGAAATATACAATGAGGTGATAAATGACTTGCTTGACCCAACTGGCCAAAATTTACGTGTTAGAGAAGATGCACAGGGAACTTATGTGGAGGGTATAAAGGAAGAAGTTGTTTTGTCTCCTGGACATGCCCTTTCCTTTATTGCTGCTGGGGAAGAGCATCGTCATGTTGGATCAAACAATTTTAACCTCTTTAGCAGCCGAAGTCACACAATTTTTACACTTATGATTGAAAGCAGTGCCCATGGTGAAGATTATGATGGAGTGGTCTTCTCTCAGCTTAACTTGATTGATCTTGCTGGATCTGAGAGCTCAAAAACTGAAACAACTGgattaagaagaaaagaaggatCTTACATAAACAAAAGTCTTCTGACACTTGGAACAGTTATTGGAAAATTGAGCGAGGGTAAAGCATCTCATGTTCCATATCGAGACTCAAAGCTTACTCGCCTCCTGCAATCTTCACTTAGTGGGCATGGCCACGTTTCACTTATCTGCACTGTAACTCCAGCATCCAGTAATATGGAAGAAACTCATAATACCTTGAAGTTTGCTAGCAGGGCGAAGCGAGTAGAAATATATGCCTCACGTAATAAGATTATTGACGAAAAATCTCTAATTAAGAAATACCAGAGAGAAATTTCAGTCCTCAAACATGAACTTGATCAGCTGAAGAAGGGGATGCAACTTGGTGTCAACCATGAGGAGATTATGAGCTTAAAGCAAAAGTTGGAAGAAGGTCAAGTGAAAATGCGGTCAAGAttggaagaagaggaagaagcaaagGTTGCTCTCATGAGTCGGATCCAGAAGCTAACCAAGCTCATTCTGGTTTCATCAAAGAATGCAATTCCGGGAAATCTAACCGATGCTTCCAGCCACCATCAGAGTCACTCTGTTGGCGAGGATGAAAATTATGATGCCCTACGTGATGGATCTCTTTTGATTGAAAATGAGAGTCAAAAAGATGTTTCCACTGTGTCATCTGATCTGTCTCATGATGTTAGACATATAAGATCGTCAAGTAAACAGACCGAAGAACTCTCCCCAACTAGCAGAATCATCACTGAATCAACACAAGCTGGTGAACTTATTAGCAGAACAAGGCTACCAGCGGGAGGGATGACAATGTCTGATGAGATGGATCTTCTAGTCGAGCAAGTCAAAATGCTTGCTGGAGATATTGCTTTCAGTACCAGCACTCTGAAACGCTTAATGGAGCAGTCTGTGAATGACCCTGAAAGCTCCAAAATACAGATTGAGAACTTGGAACTAGATATCCAAGAAAAAAGTAAGCAAATGAGGGTTTTAGAACAAAGAATAGTTGAGAGTGGTGAATCTTCCGCAACTAACTCATCACTGGTTGAAATGCAGCAGACAATCACAAGATTAATGACTCAGTGCGATGAAAAGGCCTTTGAGCTGGAGaTAAAATCTGCAGACAACCGTGTCCTTCAAGAGCAGTTAGATAATAAGTGTTCTGAAAACAGAGAATTGCAAGAAAAGGTGAAGCTGCTAGAGCAGCACCTGGCAACAGTTGGTGGTACCTCGTTAGTGCTTACTGATCAGTGTCCATCTGGAGAACACATTGATGAgttgaaaaggaaaatacaaTCCCAGgagattgaaaatgaaaaactgaAGATAGAGCAAGTTCACTTGTCTGAAGAGAATAGTGGGTTGCATGTGCAGAATCAGAAACTCTCTGAAGAAGCTTCTTATGCCAAAGAACTGGCCTCTGCAGCTGCTGTGGAATTGAAGAATTTGGCTGGGGAAGTGACCAAACTTTCATTGCAGAATGCAAAGTTGGAAAAGGAATTGATGGCTGCTCGAGACCCGGCCAACACTCCAAATGCTGTTGTACAAACAGTTAATGGTGTTAACCGCAAGTACAATGATGCAAGATCTGGGAGGAAGGGAAGAATTTCTAGCCATGCCAATGAAAGTTTGGGAGTTGGTATGGATGAGTTTGAGTCATGGAGTCTTGATGCTAATGATCTGAAGATGGAACTGCAGGCTAGGAAACAGCGAGAGGCAACTCTTGAGGCTGCATTAGCTGAAAAGGAATTTCTGGAAGAGGAATACAGGAAAAAGGTTGAAGAGGCCAAAAAAAGAGAAGCCTCCTTGGAGAATGATTTAGCAAATATGTGGGTCCTTGTGGCTAAGTTAAAGAAAGAAGGGGGTGCCGTCCCAGAATCAaacaatgatataaaaaaaggtGATGAGGAAGCACATACAAATGATCTGAAAACTAATGACATTGAAAGTAGTATTGTCCCCAAGGAGCAGATTTTGGATGTATCAATACCAGGAAATGAAATAACCAATGAACCTGTGGTGGTTCATCTTAAGGCACGCATGCAAGAGATGAAGGAAAAAGAATTCAAGCATCTTGGCAATGGAGATGCCAATTCCCATGTTTGTAAAGTATGTTTTGAATCTTCAACTGCAGCAATTCTTCTTCCATGCCGGCATTTTTGTTTGTGTAAATCTTGTTCGCTTGCTTGTTCTGAATGTCCAATATGCCGCACCAATATTGCAGATAGGCTTTTTGCTTTTACTTCTTGA 2742 0.4008 MINIAGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFGIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGEDYDGVVFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISVLKHELDQLKKGMQLGVNHEEIMSLKQKLEEGQVKMRSRLEEEEEAKVALMSRIQKLTKLILVSSKNAIPGNLTDASSHHQSHSVGEDENYDALRDGSLLIENESQKDVSTVSSDLSHDVRHIRSSSKQTEELSPTSRIITESTQAGELISRTRLPAGGMTMSDEMDLLVEQVKMLAGDIAFSTSTLKRLMEQSVNDPESSKIQIENLELDIQEKSKQMRVLEQRIVESGESSATNSSLVEMQQTITRLMTQCDEKAFELEIKSADNRVLQEQLDNKCSENRELQEKVKLLEQHLATVGGTSLVLTDQCPSGEHIDELKRKIQSQEIENEKLKIEQVHLSEENSGLHVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELMAARDPANTPNAVVQTVNGVNRKYNDARSGRKGRISSHANESLGVGMDEFESWSLDANDLKMELQARKQREATLEAALAEKEFLEEEYRKKVEEAKKREASLENDLANMWVLVAKLKKEGGAVPESNNDIKKGDEEAHTNDLKTNDIESSIVPKEQILDVSIPGNEITNEPVVVHLKARMQEMKEKEFKHLGNGDANSHVCKVCFESSTAAILLPCRHFCLCKSCSLACSECPICRTNIADRLFAFTS 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2886 913 Coils Coil 644 664 - -
Ssu3g2886 913 ProSiteProfiles Kinesin motor domain profile. 1 249 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g2886 913 PANTHER CENTROMERE PROTEIN E 3 874 - -
Ssu3g2886 913 CDD KISc_CENP_E 4 249 - -
Ssu3g2886 913 ProSitePatterns Kinesin motor domain signature. 149 160 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu3g2886 913 MobiDBLite consensus disorder prediction 387 401 - -
Ssu3g2886 913 PRINTS Kinesin heavy chain signature 150 168 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g2886 913 PRINTS Kinesin heavy chain signature 117 134 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g2886 913 PRINTS Kinesin heavy chain signature 3 24 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g2886 913 PRINTS Kinesin heavy chain signature 199 220 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g2886 913 Coils Coil 540 567 - -
Ssu3g2886 913 Coils Coil 588 615 - -
Ssu3g2886 913 ProSiteProfiles Zinc finger RING-type profile. 866 901 IPR001841 -
Ssu3g2886 913 Coils Coil 299 333 - -
Ssu3g2886 913 PANTHER KINESIN-LIKE PROTEIN KIN-7D, MITOCHONDRIAL 3 874 - -
Ssu3g2886 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 840 910 IPR013083 -
Ssu3g2886 913 SUPERFAMILY RING/U-box 865 905 - -
Ssu3g2886 913 Coils Coil 478 498 - -
Ssu3g2886 913 Gene3D Kinesin motor domain 2 280 IPR036961 -
Ssu3g2886 913 Coils Coil 732 770 - -
Ssu3g2886 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 286 IPR027417 -
Ssu3g2886 913 Coils Coil 265 285 - -
Ssu3g2886 913 Pfam Zinc finger, C3HC4 type (RING finger) 864 905 - -
Ssu3g2886 913 SMART kinesin_4 2 257 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g2886 913 Pfam Kinesin motor domain 5 249 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g2886 913 MobiDBLite consensus disorder prediction 383 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2886 Ssu-Chr3 83625348 83636755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2886 1 913 Miscellaneous Gene Families AT4G39050 72.283 0.0 1275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2886 K11498 - gmx:100800460 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2886 3 83625348 83636755 Ssu3g2886 3 83625348 83636755 ECH