Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2882 ATGCTGACCAAGTTCGAGACCAAAAGTAACAGAGTGAAGGGACTCAGTTTCCACAGCAAGAGACCGTGGATCCTCGCGAGTCTTCACAGTGGCGTGATCCAACTATGGGATTACCGAATGGGGACCCTTATTGACAGATTCGACGAGCATGATGGTCCCGTTAGAGGTGTTCATTTCCATAATTCTCAGCCTCTCTTTGTTTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTATAAGATGCATAGATGTTTGTTCACTCTTCTAGGACACCTTGATTATATCCGTACTGTGCAATTTCATCATGAGAACCCGTGGATTGTGAGTGCCAGTGATGATCAGACCATCCGCATTTGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAATCATTATGTTATGTGTGCTTCATTCCATCCAAAAGAGGATATTGTTGTGTCAGCCTCCCTGGATCAGACTGTTCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCTGGGCCTCCTGCAGATGACATTCTACGATTGAGTCAGATGAACACAGATCTATTTGGAGGTGTTGATGCAGTTGTTAAGTATGTATTGGAAGGTCATGACAGGGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTCATTGTCTCAGGAGCTGATGACCGGCAAGTGAAACTTTGGAGGATGAATGACACTAAGGCATGGGAAGTGGATACTTTGAGAGGACACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCAAATTCTGAGGATAAAAGTATTCGGGTATGGGATGCCACGAAGCGGACTGGAATTCAAACTTTCCGCAGAGAGCATGATCGGTTTTGGATTCTTGCTACACATCCTGAAATGAATTTGTTGGCAGCTGGTCATGACAGTGGCATGATAGTATTCAAGCTGGAGAGAGAAAGGCCTGCTTTTGCAGTTAGTGGTGATTCTTTGTTCTACACAAAAGATCGATTTTTGCGTTTCTATGAATTTTCAACTCAGAGAGAGACACAAGTACTTACAATTCGACGACCTGGTTCTTCAAGTCTGAATCAAAGTCCAAAGACTCTTTCCTACAGCCCTTCTGAAAATGCAATTCTTCTCTGTTCAGATGTGGATGGGGGATCTTATGAGTTGTATTGCATATCCAAGGATTGCACAAAGGACAGTTTTGGTAGGGGTGATATGCAAGATCCAAAGAAAGGTCTTGGAGGATCTGCTGTCTTTGTGGCTCGGAATAGGTTTGCTGTGCTTGACAAAGGCAGCAACCAAGTCTCTGTAAAAAGTCTGAAGAATGAGCTTGTCAAAAAGAGTGCCCTCCCGATTGCCGCAGATGCTATATTCTATGCTGGAACAGGCAACTTGCTATGTAGGTCAGAGGATAGGGTTTTTATATTTGATCTACAGCAGAGGATTGTTCTTGGTGATCTTCAGACCCCTTTTATAAAGTATGTAGTCTGGTCTAATGACATGGAAAGTGTTGCTCTGCTCAGTAAACATGCAATTGTCATCGCTAGCAAGAAGCTTGTGCATCAATGCACCCTCCATGAGACAATCCGAGTAAAAAGTGGAGCCTGGGATGACAAtggcatttttatttatacaacattaaATCATATCAAATACTGCCTCCCCAATGGAGATAGTGGGATAATAAAAACACTGGATGTCCCAATTTATATCACAAAGGTTGTTGGAAACACCATCTTCTGCTTGGGTCGGGATGGGAAAAACAAGGCTGTAACTATTGATGCAACAGAATATATCTTTAAGCTTTCCTTGCTTAAGAAAAGATATGATCATGTGATGAACATGATAAGGAATTCACAGCTTTGTGGGCAGGCAATGATTGCTTATCTACAACAGAAAGGGTTTCCTGAAGTTGCCCTCCATTTTGTGAAAGACGAGAGAATCCGATTCAATTTGGCTTTGGAGAGTGGGAACATTCAAATTGCAGTTGCATCGGCAACAGCAATTGATGAAAAAGATCACTGGTATCGATTAGGTGTTGAAGCTCTTCGTCAAGGCAATTCTGGTATAGTAGAGTATGCATACCAGAGAACcaaaaattttgagagactGTCATTCCTTTATCTCATTACTGGTAATGTGGAGAAACTttcaaaaatgttgaaaattgcTGAAGTGAAGAATGATGTGATGGGCCAGTTCCACAATGCCCTATATATGGGTGACATCAGAGAGCGTGTTAAGATCTTGGAGAATGTTGGACATTTGCCTCTTGCTTACATCAGCTGCATCAGTCCATGGGCTACATGA 2322 0.4173 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILATHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRETQVLTIRRPGSSSLNQSPKTLSYSPSENAILLCSDVDGGSYELYCISKDCTKDSFGRGDMQDPKKGLGGSAVFVARNRFAVLDKGSNQVSVKSLKNELVKKSALPIAADAIFYAGTGNLLCRSEDRVFIFDLQQRIVLGDLQTPFIKYVVWSNDMESVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTIFCLGRDGKNKAVTIDATEYIFKLSLLKKRYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLPLAYISCISPWAT 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Ssu3g2882 773 SUPERFAMILY WD40 repeat-like 4 315 IPR036322 GO:0005515
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 79 - -
Ssu3g2882 773 PANTHER COATOMER SUBUNIT ALPHA 1 765 - -
Ssu3g2882 773 Pfam WD domain, G-beta repeat 84 121 IPR001680 GO:0005515
Ssu3g2882 773 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Ssu3g2882 773 Pfam WD domain, G-beta repeat 198 231 IPR001680 GO:0005515
Ssu3g2882 773 Pfam WD domain, G-beta repeat 45 79 IPR001680 GO:0005515
Ssu3g2882 773 Pfam WD domain, G-beta repeat 126 163 IPR001680 GO:0005515
Ssu3g2882 773 ProSitePatterns Trp-Asp (WD) repeats signature. 150 164 IPR019775 -
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 164 - -
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Ssu3g2882 773 Gene3D - 643 769 - -
Ssu3g2882 773 Gene3D - 1 319 IPR015943 GO:0005515
Ssu3g2882 773 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 237 599 IPR011048 -
Ssu3g2882 773 PANTHER COATOMER 1 765 - -
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 88 IPR001680 GO:0005515
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 164 IPR001680 GO:0005515
Ssu3g2882 773 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Ssu3g2882 773 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Ssu3g2882 773 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Ssu3g2882 773 CDD WD40 9 317 - -
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Ssu3g2882 773 SMART WD40_4 237 276 IPR001680 GO:0005515
Ssu3g2882 773 SMART WD40_4 2 37 IPR001680 GO:0005515
Ssu3g2882 773 SMART WD40_4 40 79 IPR001680 GO:0005515
Ssu3g2882 773 SMART WD40_4 279 317 IPR001680 GO:0005515
Ssu3g2882 773 SMART WD40_4 193 232 IPR001680 GO:0005515
Ssu3g2882 773 SMART WD40_4 82 121 IPR001680 GO:0005515
Ssu3g2882 773 SMART WD40_4 124 163 IPR001680 GO:0005515
Ssu3g2882 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Ssu3g2882 773 Pfam Coatomer WD associated region 342 765 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2882 Ssu-Chr3 83582326 83585637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2882 62 319 Miscellaneous Gene Families AT5G08390 25.194 5.92e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2882 K05236 - gmx:100802600 1534.62