Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2870 ATGAATCGGGAAAAGTTGATGAAGATGGCTGGTTCGGTTAGAACTGGAGGAAAGGGTACCGTGAGAAGAAAGAAGAAGGCTGTCCACAAGACAACAACTACAGATGACAAAAGACTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCTATCCCTGCAATTGAGGAGGTCAATATCTTTAAGGATGATGTAGTTATCCAGTTTCTAAATCCCAAAGTTCAAGCATCCATTGCTGCTAATACTTGggtggtcagtggttctcctcAAACAAAGAAATTGCAGGATATACTCCCTAGCATTATCCACCAATTAGGACCAGATAACTTGGAAAACCTGAAGAAGCTAGCTGAGCAATTTCAGAAGCAGGCTCCTGAGGCAGGTGCTGGTTCAACCACAGCACAAGATGAGAATGATGATGACGTCCCAGATCTTGTTCCAGGACAGGATTTTGAGACAGCTGCTGAGGAGACCAAGGCTTCTTAG 483 0.4224 MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQKQAPEAGAGSTTAQDENDDDVPDLVPGQDFETAAEETKAS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2870 160 SMART NAC_2 36 91 IPR002715 -
Ssu3g2870 160 MobiDBLite consensus disorder prediction 1 30 - -
Ssu3g2870 160 MobiDBLite consensus disorder prediction 118 160 - -
Ssu3g2870 160 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA 1 159 - -
Ssu3g2870 160 Pfam NAC domain 36 91 IPR002715 -
Ssu3g2870 160 ProSiteProfiles NAC A/B domain profile. 33 97 IPR002715 -
Ssu3g2870 160 Gene3D - 48 104 IPR038187 -
Ssu3g2870 160 PANTHER TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER 1 159 IPR039370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2870 Ssu-Chr3 83494582 83495954 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2870 K01527 - gmx:100500153 301.982