Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2868 atgctcgTGTTGTTTGAAACACCTGCGGGGTTTGCCCTTTTTAAAGTGCTGGATGAAGGCAAGCTTTCTAAAGTTGAGGACTTATGGAAGAACTTTTCCAGTGCAGATACTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTCGAGAACACTTCAGAAGCTTTAGAGGCAGCTACTTTACTGATCGATGGAAAAGCTAGCAAGGGTCTGCGTAAGTTCCTGCGTGCTCATTGTGAAAATGAAACACTAGGGGTGGCTGATTCAAAGCTGGGGAATGTGATTAAGGAGAAATTGAAAATCGACTGTATTCACAACAATGCAGTTATGGAGTTGATGAGAGGTGTTAGAAATCAGTTAACTGAACTCATATCTGGTCTAGCTGTACAAGACATGGCCCCAATGAGCTTGGGTTTATCTCATAGCTTATCGAGATACAAGTTGAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTTGATGATCTAGATAAAGAGTTGAATACCTATGCCATGAGGGTTCGAGAATGGTATGGCTGGCATTTCCCAGAGCTTACTAAAATAATACAGGATAACATCCTGTATGCAAGAGCAGTCAAGTTGATGGGCGATCGTGTTAATGCAGCTAAGCTTGATTTCTCTGAGATTTTGCCAGAGGAAGTTGAGGCAGAGTTGAAGGAGGCAGCTGTGATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGGCAAATATTAGAGAACTCTGTGACCAAGTTTTGTCTCTTTCGGAATACAGGGCACAACTCTATGATTATCTAAAGAGTAGGATGAACACCATTGCACCCAATTTGACTGCACTGGTTGGGGAGCTTGTTGGCGCTCGCCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCCAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCTGAGAAGGCCCTCTTTAGGGCACTGAAGACTAAGCATGCTACTCCTAAGTATGGTCTTATATACCATGCATCCCTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAAATTTCTCGGTCACTTGCTGCAAAGTCAGCATTGGCTATTAGATGTGACGCACTTGGAGATGGCCAAGATAACACCATGGGATTGGAGAACAGAGCCAAGCTTGAAGCACGATTGAGGAACCTTGAAGGCAAAGAATTAGGTCGTTTTGCTGGTTCTGCCAAGGGGAAGCCCAAGATAGAAGCATATGACAGGGACCGAAAGAAAGGAGCTGGAGGACTGATAACCCCGGCTAAGACATATAATCCTTCAGCTGATTCAGTTATTGGGCAAATGGTTAATTCTGTGATGGATGAAGATACACAAGAGCCTTCTGTTgctgataaaaagaaagaaaagaaggaaaagaagaaaaagaaggagaaaaatgaaGAGGATGTAACATTGCAAGCTGATGTAGATGGTGAGGAACCAGAACCAGAAGttgtgaaaaaagaaagaagaagaaaaggaaggaatCTACTGAGAATGCTGAGTTGCAGAATGGGAATGACGATTTGA 1563 0.412 MLVLFETPAGFALFKVLDEGKLSKVEDLWKNFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRAHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYARAVKLMGDRVNAAKLDFSEILPEEVEAELKEAAVISMGTEIGELDLANIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKSALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDRDRKKGAGGLITPAKTYNPSADSVIGQMVNSVMDEDTQEPSVADKKKEKKEKKKKKEKNEEDVTLQADVDGEEPEPEVVKKERRRKGRNLLRMLSCRMGMTI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2868 520 MobiDBLite consensus disorder prediction 434 455 - -
Ssu3g2868 520 Gene3D Nop domain 285 397 IPR042239 -
Ssu3g2868 520 MobiDBLite consensus disorder prediction 407 503 - -
Ssu3g2868 520 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Ssu3g2868 520 Coils Coil 460 484 - -
Ssu3g2868 520 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Ssu3g2868 520 SUPERFAMILY Nop domain 153 397 IPR036070 -
Ssu3g2868 520 SMART NOSIC_2 159 211 IPR012976 -
Ssu3g2868 520 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Ssu3g2868 520 Gene3D - 129 284 - -
Ssu3g2868 520 PANTHER NUCLEOLAR PROTEIN 58 1 481 - -
Ssu3g2868 520 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 481 IPR045056 GO:0030515|GO:0031428|GO:0032040
Ssu3g2868 520 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2868 Ssu-Chr3 83457493 83461076 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2868 K14565 - gmx:100784721 891.723