Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2864 ATGGTTGTCCTTGCTGCATCCATTGTGAGCAAATCTGGCAAAGTGCTAGTTTCTAGACAGTTTGTGGACATGTCTTGTATCAGAATTGAGGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACTAGAAAGCAACACACATATGTTGAGACGGAGAATGTGCGCTATGTTTACCAGCCAATGGAAGCACTATACCTGCTCCTTGTAACAAACAAACATAGCAACATACTGGAAGATTTGACGACTCTGAGACTTCTGTCCAAACttGTGCCTGAATATTCTTACTCCCTTGATGAAGAGAGTATTTGCCAACATGCATTTGAGTTCATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAATGTGACTGTTGCACAAGTTAAGCAATACTGTGAGATGGAGAGTCATGAAGAGAAACTGCACAAGCTGGTTATGCAGAGCAAAATCAATGAAACTAAGGATGTTATGAAGAGGAAAGCTAGTGAGATTGATAAAAGCAGGATTGAAAAGAACAGAGGTGATAAAGGGGGATTCGGTCCTTTACAGTCAATAGGCTCTGGAAGAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGCGGAACTGGTTTTGGAAGTGGCTCTGGTTTCGGATTGAGTTCTGATGTTGATTCCTTTTCTACCAAGTCTAAAGGTCGTCCAACTTCATCTGCCACTGCTCCACTGAAAGGTCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAGTTTTTGGAATCATTGAAAGCAGAAGGTGAGGTCATTCTTGAAGATGTTCAGCCAAAACTTGGCCTGTCTCAGGCAGCTGCCCCACCACCTACGGATCCCATCACTTTAACTGTTGAAGAGAAACTAAATGTGTCACTAAAACGAGATGGCGGAGTCAGTAATTTTGATGTTCAAGGCACATTGTCTCTCCAAATTCTTAATGAAGAGGATGGACATATTCAAGTTCAGGTCCAGACTGGTGAGAATCAAGCCATCTTTTTCAAGACGCACCCTAACATGAATAAAGAATTATTTGCCAATGAAAATACACTAGGCCTAAAGGATCCCAATAGGCCTTTCCCCACTGGTCAAGCATGTGGCTCTGAAGGTGTTGGTCTTTTAAAGTGGAGAATGCAAAGCACTGATGAGTCAATGGTGCCACTGACAATCAACTGTTGGCCCTCTTCTTCTGGAAATGAAACTTATGTCAGCATTGAGTATGAGGCTTTGTCAATGTTTGATTTGCGGAATGTTGTGATCTCAGTACCTCTTCCAGCTCTTCGAGAAGCACCATCTGTTAGGCAGATTGATGGGGAATGGAGGTATGACTCTAGGAATTCCTTTTTGGAGTGGTCTGTCCTTCTGATTGATAATTCAAACTGCAGTGGGTCAATGGAGTTTGTTGTTCCACAAGCAGAATCATCAGCATTCTTTCCCATATCAGTTCGTTTTATGGCAACTGATACATTTAGTGACCTGAAGGTCACCAACGTCACACCGCTAAAGGGTGGCAATCCTCCCAAATATTCTCAGAGAACACAGTTGATCACAGAAAACTACCAAGTTGTGTGA 1593 0.4218 MVVLAASIVSKSGKVLVSRQFVDMSCIRIEGLLAAFPKLVGTRKQHTYVETENVRYVYQPMEALYLLLVTNKHSNILEDLTTLRLLSKLVPEYSYSLDEESICQHAFEFIFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSRIEKNRGDKGGFGPLQSIGSGRIENSFSDLSISSSGTGFGSGSGFGLSSDVDSFSTKSKGRPTSSATAPLKGLGMKLGKSQRTNQFLESLKAEGEVILEDVQPKLGLSQAAAPPPTDPITLTVEEKLNVSLKRDGGVSNFDVQGTLSLQILNEEDGHIQVQVQTGENQAIFFKTHPNMNKELFANENTLGLKDPNRPFPTGQACGSEGVGLLKWRMQSTDESMVPLTINCWPSSSGNETYVSIEYEALSMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSFLEWSVLLIDNSNCSGSMEFVVPQAESSAFFPISVRFMATDTFSDLKVTNVTPLKGGNPPKYSQRTQLITENYQVV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2864 530 Gene3D Mu homology domain, subdomain B 288 510 - -
Ssu3g2864 530 SUPERFAMILY SNARE-like 5 142 IPR011012 -
Ssu3g2864 530 PANTHER S-ACYLTRANSFERASE 1 529 - -
Ssu3g2864 530 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 285 529 IPR036168 -
Ssu3g2864 530 MobiDBLite consensus disorder prediction 221 244 - -
Ssu3g2864 530 ProSiteProfiles Mu homology domain (MHD) profile. 285 530 IPR028565 -
Ssu3g2864 530 Pfam Adaptor complexes medium subunit family 285 515 IPR028565 -
Ssu3g2864 530 PANTHER COATOMER SUBUNIT DELTA 1 529 IPR027059 GO:0006890|GO:0030126
Ssu3g2864 530 MobiDBLite consensus disorder prediction 163 189 - -
Ssu3g2864 530 Gene3D Mu homology domain, subdomain B 393 492 - -
Ssu3g2864 530 CDD AP_delta-COPI_MHD 286 527 - -
Ssu3g2864 530 CDD Delta_COP_N 4 133 - -
Ssu3g2864 530 MobiDBLite consensus disorder prediction 163 177 - -
Ssu3g2864 530 Gene3D - 3 141 - -
Ssu3g2864 530 Pfam Clathrin adaptor complex small chain 8 130 IPR022775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2864 Ssu-Chr3 83424109 83429427 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2864 K20471 - gmx:100780122 940.258