Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2862 ATGTCCGGCCCGCTCGACCGTTTCGCCAGACCCTGTTTCGAAGGATTCTCGGGGAGTGAcgagaagagagaaaggaggtcCGATTTCGAGAACTCCGAGGACGAGAGGAGGACGAGGATCGGATCTCTGAAGAAGAAGGCGCTGAATGCGTCTTCGAAGTTCAAGCATTCCCTGAAGAAGAAGAGCGGCAGGAGAAAAAGCGATGGCCGCGTTAGCTCTGTTTCGATTGAGGACGTTCGGAATTTCGAGGAGCAGCAGGCAGTTGATGCATTTCGCCAATCCTTGATTATGGATGAATCGCTCCCTGAAAAACACGATGATTACCACGTCATGTTAAGGTTCCTGAAAGCGAGGAAGTTTGATATAGAAAGGGCAAAGCATATGTGGGAAGATATGCTAAAATGGAGGAAGGAGTTTGGTGCTGACACCATTATCGAGGATTTcgagttcaaagaattaaatgaAGTTGTGAGGTATTATCCACATGGCCATCACGGGGTTGATAAGGAGGGAAGGCCTGTTTACTTTGAGAGACTTGGGAAAGTGGATCCGAACAAACTTATGCAGGTTACAACCATGGATAGATATGTAAAATATCATGTACAGGAGTTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACAATTGCTGCCAAAAGGCACATAGATTCAAGTACCACGATATTAGATGTTCAAGGCGTGGGCCTTAAGAACTTTACGAAGTCTGCCAGGGATCTGATTATGAGATTACAAAAGATTGATGGTGACAATTACCCTGAGACTCTTTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTCTGGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATACATGTTCTTGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGTCCCTGGAAAAACCCTGAAATATTGAAGATGATTCTGAGCGGTGAAGCAAGGCGGGCAAGGCCGGTAGTAAAAGTTCTAAACAGTGAAGGGAAAGTTATTGCATATGCTAGACCACAATACCCGAAGGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATAGCTTCACCAAAAGCGGTGAAGAGCTACTCACACCTGAGGTTGACACCTGTTCGTGAGGAAGCTAAGGTAGTTGGAAAGTCAAGCTATGCTGGTGGTGGTAACTTAGCTGGGTATGATGAATACGTTCCAATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAAGCAAGCATCATTCCAGAGGTCTCAAACTTCAAAAGGAACACCTCCCCTCACTGACACTCCAAAAACTCCCGAAGGGATTCGAGCTCGGATTTTGGTAGCTCTAACTATCTTCTTTATGACACTGTTCACTCTCTTCCGTTCAGTCGCATGCCGTGTGACCAAGAAACTTCCTGCAGTATCATCTCATGATGATCAGGGCACTTCAGAGCCAACTCTTGATACAACAAACAATGAAGACTATCGTCCTCCTTCACCAACTCCAGCATACACACAGGCAAATCTCCTTTCCTCCATGATGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTCACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGAGGAATTGCTAAATGCTGCTGTATGTCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTTTATGAAGCATTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAGAAGCTAAGTTACGGAAGAAGTTTTGCTGGTGA 1884 0.4395 MSGPLDRFARPCFEGFSGSDEKRERRSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSGRRKSDGRVSSVSIEDVRNFEEQQAVDAFRQSLIMDESLPEKHDDYHVMLRFLKARKFDIERAKHMWEDMLKWRKEFGADTIIEDFEFKELNEVVRYYPHGHHGVDKEGRPVYFERLGKVDPNKLMQVTTMDRYVKYHVQEFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSEGKVIAYARPQYPKVKGSDTSTAESGSEAEDIASPKAVKSYSHLRLTPVREEAKVVGKSSYAGGGNLAGYDEYVPMVDKAVDAGWKKQASFQRSQTSKGTPPLTDTPKTPEGIRARILVALTIFFMTLFTLFRSVACRVTKKLPAVSSHDDQGTSEPTLDTTNNEDYRPPSPTPAYTQANLLSSMMKRLGELEEKVHTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEAKLRKKFCW 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2862 627 MobiDBLite consensus disorder prediction 1 72 - -
Ssu3g2862 627 MobiDBLite consensus disorder prediction 16 42 - -
Ssu3g2862 627 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 3 624 - -
Ssu3g2862 627 Gene3D - 140 350 IPR036865 -
Ssu3g2862 627 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Ssu3g2862 627 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Ssu3g2862 627 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Ssu3g2862 627 Pfam CRAL/TRIO, N-terminal domain 104 131 IPR011074 -
Ssu3g2862 627 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Ssu3g2862 627 MobiDBLite consensus disorder prediction 49 66 - -
Ssu3g2862 627 Gene3D - 70 139 - -
Ssu3g2862 627 SMART sec14_4 152 323 IPR001251 -
Ssu3g2862 627 MobiDBLite consensus disorder prediction 511 536 - -
Ssu3g2862 627 MobiDBLite consensus disorder prediction 452 468 - -
Ssu3g2862 627 MobiDBLite consensus disorder prediction 452 473 - -
Ssu3g2862 627 CDD SEC14 150 321 IPR001251 -
Ssu3g2862 627 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Ssu3g2862 627 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 624 - -
Ssu3g2862 627 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Ssu3g2862 627 SUPERFAMILY CRAL/TRIO domain 152 345 IPR036865 -
Ssu3g2862 627 Coils Coil 546 566 - -
Ssu3g2862 627 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Ssu3g2862 627 MobiDBLite consensus disorder prediction 509 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2862 Ssu-Chr3 83336642 83341464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2862 85 317 Acyl Lipid Metabolism Gene Families AT5G47730 28.926 2.71e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2862 - - gmx:100785793 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2862 3 83336642 83341464 Ssu3g2862 3 83336642 83341464 ECH