Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2861 ATGAGTTGCACCAACCTCGCTTCCCATTTTGGCCCTTCTATATATCATCAGAGATATATTCGGATCATAAATTTGAGTTTTCTCTTGCTTTGCAACGCCTACATTCCTGTCACGAGAGCTTCTAACATGCATGTTGTTGCATGGCTAGAGTTAAGGTGTAGGCGCATATGTAACTTGTTGATTCTATTCTGCCTTACTTACGGCTGTCTTGAGATTGAATATTCTGAGGATGAAAAGAAGACAAAGCTTGGCTCTATAAAGAAGGTAGCAATCAATGCGTCTTCAAAGTTCAGGTATTCCTTGCAAAAGAAGGGGAGGAGGCATAGCAGGGTTATGTCTGTTGCTATTGAGGATGATGTTGATGCAGAAGAGTTGCAAGTAGTTGATGCTTTTCGTCAAGCACTTATCTTGGAAGAGCTATTACCCTCAAAACATGATGATCATCATATGATGTTAAGATTCTTGAGAGCAAGGAAGTACGAcattgagaaaacaaaacaaatgtgGGCAGATATGCTTCAGTGGAGGAGGGAGTTTGGTGCTGACACCATCATGGAGGATTTTGAATTCAAGGAGATAGACGAAGTTCTAAAATACTACCCGCAAGGGCATCACGGGGTTGATAAGGAAGGGCGACCTGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAACAAGCTGATGCAAGTAACAACTATGGATCGCTATCTTAAGTACCACGTAAGAGAGTTTGAGAGGACATTCGTAGTTAAGTTCCCGGCATGTTCAATCGCAGCAAAGAAGCACATTGACCAAAGCACAACTGTCTTGGATGTGCAAGGAGTGGGTCTCAAAAGTTTGAACAAGGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTATCCTGAGACCTTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTGTTGTGGAACACTATTAAGTCGTTTCTTGATCCTAAGACCACCTCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACCTGTGCAGGAAAAGGTGGTTGTTTGCTTTCGGACAAGGGACCATGGAATGACCCAGAAATCTTTAAGATGGTTCAAAATGGTGAAGGAAAATGCAGGAGGAAAACCTTATCCGGAATTGAAGAGAAAACAATCATTGAAGATGAAACAGCACATCAAAAGGTAGTTAAATTAACCTACTCTTTGGGTATTCCCCTTACATATTGGCAGGTCGCAGAACAATGTAATGTATATGGTGCCTTTGTCCCAGTGATTGACAAGCCAGTCAACACATCTTGCAAAAAGGCCGTACAAAATGATCAATTTGCATATTCTAAAGCTGCAGATTGTTTCCCTAGCAATGCTTGCAAGACTTCTAATGGGTTTAGAATTCCATTTACTGGTGGAATCATGGCCATTCTTATGGGAGTTATAACAATGATCCGCATGACACGGAACATGCCAAGGAAAGTCACTGAAGTTGCATTGTATGGTCACCCAGTATATTGTGGTGGCAATATGATGAAAGCACGTGCCATTTCCGTTGATGATCACATGGCCATGATGAAGCGCATGGCTGAACTAGAAGAGAAGGTAAATGTCCTCACTATGAAACCTGCCATGCCACCTGAAATGGAAGAATTGCTGAATAATGCTCTAAACAGGGTCAACACGCTGGAACAAGAGTTGGCTACTACCAAAAAGgCACTTGATGATGCCCTTACTCGACAAGTGGAGCTCCAAACCCACattgccaaaaagaaaaagaagaagttggTAGGTCATCTTAACTTCGACACTGGTCCATTACTTGACATTAATTTCAATAGGTAG 1899 0.4118 MSCTNLASHFGPSIYHQRYIRIINLSFLLLCNAYIPVTRASNMHVVAWLELRCRRICNLLILFCLTYGCLEIEYSEDEKKTKLGSIKKVAINASSKFRYSLQKKGRRHSRVMSVAIEDDVDAEELQVVDAFRQALILEELLPSKHDDHHMMLRFLRARKYDIEKTKQMWADMLQWRREFGADTIMEDFEFKEIDEVLKYYPQGHHGVDKEGRPVYIERLGQVDSNKLMQVTTMDRYLKYHVREFERTFVVKFPACSIAAKKHIDQSTTVLDVQGVGLKSLNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTIKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCAGKGGCLLSDKGPWNDPEIFKMVQNGEGKCRRKTLSGIEEKTIIEDETAHQKVVKLTYSLGIPLTYWQVAEQCNVYGAFVPVIDKPVNTSCKKAVQNDQFAYSKAADCFPSNACKTSNGFRIPFTGGIMAILMGVITMIRMTRNMPRKVTEVALYGHPVYCGGNMMKARAISVDDHMAMMKRMAELEEKVNVLTMKPAMPPEMEELLNNALNRVNTLEQELATTKKALDDALTRQVELQTHIAKKKKKKLVGHLNFDTGPLLDINFNR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2861 632 PRINTS Cellular retinaldehyde-binding protein signature 150 172 - -
Ssu3g2861 632 PRINTS Cellular retinaldehyde-binding protein signature 352 361 - -
Ssu3g2861 632 PRINTS Cellular retinaldehyde-binding protein signature 319 338 - -
Ssu3g2861 632 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 68 614 - -
Ssu3g2861 632 Gene3D - 110 179 - -
Ssu3g2861 632 SUPERFAMILY CRAL/TRIO N-terminal domain 118 188 IPR036273 -
Ssu3g2861 632 Pfam CRAL/TRIO, N-terminal domain 144 171 IPR011074 -
Ssu3g2861 632 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 68 614 - -
Ssu3g2861 632 SUPERFAMILY CRAL/TRIO domain 192 388 IPR036865 -
Ssu3g2861 632 Coils Coil 540 560 - -
Ssu3g2861 632 Coils Coil 571 598 - -
Ssu3g2861 632 SMART sec14_4 192 363 IPR001251 -
Ssu3g2861 632 CDD SEC14 193 361 IPR001251 -
Ssu3g2861 632 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 192 366 IPR001251 -
Ssu3g2861 632 Gene3D - 180 391 IPR036865 -
Ssu3g2861 632 Coils Coil 277 297 - -
Ssu3g2861 632 Pfam CRAL/TRIO domain 198 360 IPR001251 -
Ssu3g2861 632 SMART CRAL_TRIO_N_2 147 172 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2861 Ssu-Chr3 83330848 83335362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2861 126 357 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 1.17e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2861 - - gmx:100792335 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2861 3 83330848 83335362 Ssu3g2861 3 83330848 83335362 ECH