Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2860 ATGGCCAGTGATtcttttgtgatttccaatggCAATGGCAATACCAAGTCAGAGCCGCATCCGCAGAGGACTTACCAAGCAGTAGTGATTGCAACCCGAGATATGGGCATTTCTAAGGATGGAAAATTACCGTGGACATTACCCACTGATCTCAAATTTTTTGAGGAGATCACTACAAAAACATCCGATCCTGGGAAGAAGAATGCTGTTGTGATGGGTAGAAAATCATGGGAGAGCATCCCTCCTAAGAGCAGGCCTCTTCCTGGCCGCCTTAATGTTGTTCTGACTCGCTCAGGTAGCTTTGACATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGTGTGGCTTCTGCCATGGAACTGTTGGCTGCTTCTCCTTACTGCCTGTCAATTGAGAAAGTATTTCTTACAGGAGGTGGTGACATATTTagAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGATGCAAGCATTGAGTGTGACACTTTTATGCCACAAATTGACACCTCTGTATTTCAGCCGTGGTATTCGTCATTCCCTTTGGTGGAAAACGACCTTCGCTATTCTTTCACCACTTATGTGCGTGTAAGGAGTTCTCCAGCAGAGTCCCTGGGTCAGAATACTGATccattttttgataataattcaGACTCTCCAAAATTTGAGGtcaagaaattttcttttcttcctaaaATGATTTATGAGAGACACGAGGAGTTTAAGTATCTTAGTTTGGTTCAAGAAATCATTTCTGAAGGCACAACCAAGGATGATAGGACAGGGACTGGTACTTTGTCAAAATTTGGCTGCCAGATGAGGTTTAATCTGCACAGAAACTTTCCACTTCTAACAACAAAGAAAGTATTTTGGCGAGGAGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACGAGTGCCAAGGTGCTGCAGGAAAAAGGGATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGGCAAGCAGGACCATCACTAATTTTCATTGGTTTGACAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTACACTGACATGCATGCTGACTACACTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGACGGATCATTCTCTCAGCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCAAATGGGGAGTTATCGTGTCAAATGTACCAGCGATCTGCTGACATGGGCCTGGGTGTGCCATTTAATATTGCTTCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCTGGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCTTTGCAGGAACAGCTCCAGAACCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTGGCCGCTGATTTCAAGCTCATAGGATATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAA 1611 0.4165 MASDSFVISNGNGNTKSEPHPQRTYQAVVIATRDMGISKDGKLPWTLPTDLKFFEEITTKTSDPGKKNAVVMGRKSWESIPPKSRPLPGRLNVVLTRSGSFDIATAENVVICGSVASAMELLAASPYCLSIEKVFLTGGGDIFREALNAPGCEAAHITEIDASIECDTFMPQIDTSVFQPWYSSFPLVENDLRYSFTTYVRVRSSPAESLGQNTDPFFDNNSDSPKFEVKKFSFLPKMIYERHEEFKYLSLVQEIISEGTTKDDRTGTGTLSKFGCQMRFNLHRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDRQAGPSLIFIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYTGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVLGDFIHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2860 536 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 230 536 IPR036926 -
Ssu3g2860 536 ProSitePatterns Thymidylate synthase active site. 398 426 IPR020940 GO:0004799|GO:0006231
Ssu3g2860 536 PANTHER THYMIDYLATE SYNTHASE 1 1 536 IPR045097 GO:0016741
Ssu3g2860 536 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 536 - -
Ssu3g2860 536 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
Ssu3g2860 536 SUPERFAMILY Dihydrofolate reductase-like 23 201 IPR024072 -
Ssu3g2860 536 CDD DHFR 27 200 IPR001796 GO:0004146|GO:0046654
Ssu3g2860 536 Pfam Thymidylate synthase 247 536 IPR023451 -
Ssu3g2860 536 Gene3D Dihydrofolate Reductase, subunit A 5 203 IPR024072 -
Ssu3g2860 536 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146|GO:0046654
Ssu3g2860 536 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2860 536 CDD TS_Pyrimidine_HMase 248 489 IPR023451 -
Ssu3g2860 536 TIGRFAM thym_sym: thymidylate synthase 247 536 IPR000398 GO:0004799|GO:0006231
Ssu3g2860 536 PIRSF DHFR-TS 8 536 IPR012262 GO:0004146|GO:0004799|GO:0006730
Ssu3g2860 536 Hamap Thymidylate synthase [thyA]. 245 536 IPR000398 GO:0004799|GO:0006231
Ssu3g2860 536 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 237 536 IPR036926 -
Ssu3g2860 536 PRINTS Thymidylate synthase family signature 431 457 IPR000398 GO:0004799|GO:0006231
Ssu3g2860 536 PRINTS Thymidylate synthase family signature 413 428 IPR000398 GO:0004799|GO:0006231
Ssu3g2860 536 PRINTS Thymidylate synthase family signature 286 307 IPR000398 GO:0004799|GO:0006231
Ssu3g2860 536 PRINTS Thymidylate synthase family signature 387 406 IPR000398 GO:0004799|GO:0006231
Ssu3g2860 536 PRINTS Thymidylate synthase family signature 469 486 IPR000398 GO:0004799|GO:0006231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2860 Ssu-Chr3 83308075 83311734 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2860 K13998 - gmx:100786311 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2860 3 83308075 83311734 Ssu3g2860 3 83308075 83311734 ECH