Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2859 ATGACTCGCCAACTCCAAACAGTAGTCTCCGCCGCGGCGTCCGTGGTGGCCACCGTGATGCTCCTCCGGTCCCTCACCCGCGACTACCTCCCCCCGGAGCTTCATCACTACCTCCGCTGCAAATTTTCCAAGCTCCTCTCCTCGTTCTCCTCCGAACTCACCCTGGTCATCGACGAGTTCCACGCGCTCACCCCGAACCCGCTCTTCACCGCCGCGCAGCTCTACCTGAAACCCCACGCCGCCCCCAACACGAAGCGCTTCCGCGCCACCCTGCCCCCGAAATCCCGCCACATCACCCTCCTCATGGACGGCAACGAGGAAATCGCCGACACCTTCAACGGCGTCCCCTTCCGCTGGAAGCTCGTCTCCCAACGGATCCCTTCCAAGTTCGTCCAACGCGACGCGTTCCACGGCGCGTTGGTGTCCGAGGCTCGCTTCTTCGAGCTGCGGTTCCACAAGAGGCACAGGGACATGGCCCTGTCGGAGTACCTGAAGCGCGTGATGGAGGTGGCAGAGGAGGCGCGTCAGCGGAGGAAGACGCTCAGGCTCTTCACGCTGAAGGACATGAGGATACGGATGAGAGGGAGCGACATGTGGCAGTGCGTGAATCTGGACCATCCCGCCACGTTTGAGACGCTGGCCATGGATTCGGGGGCGAAGGAGATGATAATGGGGGATTTGGATCGGTTTCTGGAGGGGAAGGGTTTGTATAAGAGTGTTGGGAAGGCGTGGAAGCGAGGCTACCTGCTTTCGGGGCCTCCTGGGACGGGTAAATCGAGCTTGATCGCTGCCATGGCGAATTATCTGAATTTCGATGTGTATGACTTGGAGCTCACTGATCTTAGGCGTAACTCTGACCTCAGGAAGTTGCTGATTGCCACCGGGAATCGCTCTATTCTTGTCGTCGAGGATATTGATTGTTCCCTTCAGCTGCAGAATAGGCTTACAAAATCGTCGCAACCCGTGGTTACCACACCCTCTCCTTACGACCCATATGACAATCCTAAACCCCAGGTGACGTTATCGGGTTTTCTCAATTTCATAGATGGGTTGTGGTCTAGTTGTGGGGATGAGCGGATCATAGTGTTTACGACCAATCACAAGGACAAATTGGACCCTGCTCTGTTGCGCCCTGGCCGTATGGATGTGCACATCGACATGACTTACTGCACTCCATGTGCGTTTAAAATGCTGGCTTCTAATTACTTTGGGATCACGGAGCACCCACTTTTTGTTCAGGTTGAGAGATTGCTAGGGACGACCAATGTCACTCCTGCAGAGGTGGGGGAGCTATTTTTGAAGAATGAAGACCCTGAAATTGCGCTCAAAAGCATGATGGAGCTCCTTATAGAGAAGGGACGAAATCATGAAGATCAAAGCAGCACTCACCACTCAACGATTTGA 1404 0.5534 MTRQLQTVVSAAASVVATVMLLRSLTRDYLPPELHHYLRCKFSKLLSSFSSELTLVIDEFHALTPNPLFTAAQLYLKPHAAPNTKRFRATLPPKSRHITLLMDGNEEIADTFNGVPFRWKLVSQRIPSKFVQRDAFHGALVSEARFFELRFHKRHRDMALSEYLKRVMEVAEEARQRRKTLRLFTLKDMRIRMRGSDMWQCVNLDHPATFETLAMDSGAKEMIMGDLDRFLEGKGLYKSVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTDLRRNSDLRKLLIATGNRSILVVEDIDCSLQLQNRLTKSSQPVVTTPSPYDPYDNPKPQVTLSGFLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIDMTYCTPCAFKMLASNYFGITEHPLFVQVERLLGTTNVTPAEVGELFLKNEDPEIALKSMMELLIEKGRNHEDQSSTHHSTI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2859 467 SMART AAA_5 244 391 IPR003593 -
Ssu3g2859 467 PANTHER - 6 462 - -
Ssu3g2859 467 PANTHER BCS1 AAA-TYPE ATPASE 6 462 - -
Ssu3g2859 467 Pfam Domain associated at C-terminal with AAA 30 122 IPR025753 -
Ssu3g2859 467 ProSitePatterns AAA-protein family signature. 359 377 IPR003960 GO:0005524|GO:0016887
Ssu3g2859 467 Gene3D - 386 453 - -
Ssu3g2859 467 Gene3D - 198 385 IPR027417 -
Ssu3g2859 467 CDD AAA 245 389 - -
Ssu3g2859 467 Pfam ATPase family associated with various cellular activities (AAA) 249 387 IPR003959 GO:0005524|GO:0016887
Ssu3g2859 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2859 Ssu-Chr3 83301476 83303488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2859 210 387 Miscellaneous Gene Families AT2G29080 26.562 8.27e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2859 K08900 - gmx:100789716 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2859 3 83301476 83303488 Ssu3g2859 3 83301476 83303488 ECH