Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2851 ATGGAAGGAACTGGAGGCAGCAGTGCCTCGGCTGCTGCACCCGTGAACCAATGGTGGCAGGAATTTTCGAAGCTATTTCAATATTATCTGGATAAATCTACCCCGCACGCTACGTATAGATGGATTGGGAGTTTGGTTATTGTGTTGATCTATGTTTTGCGGGTTTTTTATGTCCAAGGATTTTACATTGTGTCTTATGGATTGGGAATCTACCTGCTGAATCTGTTGATTGGGTTTCTCTCACCGTTGGTTGATCCCGAGCTGGAGCCTTCTGATGGACCTCTGCTGCCGACTAAAGGTTCTGACGAGTTCAAACCGTTCATTCGCCGACTGCCTGAGTTTAAGTTCTGGTATTCTTTCACAAAGGCTTTTTGCATAGCATTTGTGATGACTTTCTTTTCTGTATTTGACGTTCCTGTCTTCTGGCCAATATTACTCTGTTATTGGATTGTTCTGTTTGTCCTTACAATGAGGCGCCAAATTGCACACATgatcaaatacaaatatattccTTTCAACCTTGGAAAGCAGAAGTATAGTGGCAAAAAATCTTCTGCAAGTAGCAGCGGCAGCCGTGCAGACTGA 585 0.4274 MEGTGGSSASAAAPVNQWWQEFSKLFQYYLDKSTPHATYRWIGSLVIVLIYVLRVFYVQGFYIVSYGLGIYLLNLLIGFLSPLVDPELEPSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFNLGKQKYSGKKSSASSSGSRAD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2851 194 Pfam Rer1 family 18 180 IPR004932 GO:0016021
Ssu3g2851 194 PANTHER PROTEIN RER1A 1 190 - -
Ssu3g2851 194 PIRSF AtER_Rer1p 1 190 IPR004932 GO:0016021
Ssu3g2851 194 PANTHER PROTEIN RER1 1 190 IPR004932 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2851 Ssu-Chr3 83108898 83110910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2851 1 194 Miscellaneous Gene Families AT2G21600 78.974 1.71e-113 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2851 - - mnt:21401534 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2851 3 83108898 83110910 Ssu3g2851 3 83108898 83110910 ECH