Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g2850 | ATGGGGAAGGCGAAGGGGAAGCACCGTTTGGACAAGTTCTACCACCTAGCGAAGGAGCACGGTTACAGGTCGAGGGCGTCATGGAAGCTGGTCCAGCTGAACTCCAAGTTCCGGTTCCTGGAATCCGCGCGCGGCGTCCTGGACCTGTGCGCCGCCCCCGGCGGGTGGATGCAGGTGGCGGTCCAGCGCGTCCCCGTGGACCACCTGGTGATCGGCGTGGACCTGGCCCCCATCGCCCCCATCCGCGGCGCCATCGCCATCCAGGAAGACATCACCAGGCCCGAGTGCAAGTCCCGCATCAAGAAGCTCATGAACGAACACGGTTGCCGCGCCTTCGACGTCATCCTGCACGACGGTTCCCCCAACGTCGGTGGCGCCTGGGCTCAGGAAGCCATGAGCCAGAACGCACTCGTCATCGATGCTGTCAAGTTGGCCACGCACTTCTTAGCCCCCAACGGCATCTTTGTAACcaagATTTTCAGGTCGCAAGATTACAGTTCTATAGTGTATTGCTTAAAGCAGTTGTTTGAAAAGGTTGAGGTGGATAAACCAGCGGCTAGTCGTTCTGAATCTGCTGAGATATATGTTTTGGGCCTTAGGTACAAGGCCCCTGCCAAGATTGATCCGCGCCTTCTCGATGTCAAGCATCTCTTTCAGGGATCTGTAGAACCGCAGCCTAAGGTAGTGGATGTACTTAgagaaaataagcaaaaaaggCATCGTGATGGCTATGAAGATGGAAATACAACTTTAAGGAAGGTGTCTTCAGCTGCAAATTTCATTTGGTCAGATTCTCCTCTTGAGATCCTTGGTTCAGTCACTTCCATAACCTTTACCGATCCAGCTGATTTACCAATCAAGGATCATGACCTAACAACTGAAGAGATAAAATCTCTCTGCGATGATTTAAGGGTTTTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGAGGATTCACATTAGAAAAGCTCTTTCACCAACTCAAAAGCCTGATCCTACCACTACAGAACAGATGGAAAATGATCATAAGGTGGATGAAGAAGATAGAATACTCAATGAAATGGAGGAACTGACTTATGTAATGGACCGCAAGAAGAAACATGCAAAGAAGCTTCTTGCAAAAAGAAGAGCCAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGTAATAGAGGATGGTTATGTAGATCAGGAGTTGTTTTCTCTTTCCTCGATCAAGGGTAAGAAGGATCTGGTGGCTGTTGACAACACTGAATATGAAGGTGACGAGGGTGAAGTAGAAGACAGTGAGAATGAAGAAATCCATGAAGGCCCGCAGCATTCATCCAGTGACTTACAAGATTCTGATGAGGAACGCAAAAGATACGATGAACAAATGGAAGACTTGCTTGATCAAGCTTATGAGCGATTTGTGATCAGAAAGGAAGGAAGTACAAAGCAGCGGAAGCGAATTAAAAAATCCTATGATGCAGAGGCCCAACTTTTGGAGGGTGGTGAGGATGATGATATTGTTCAGTCCAAGTATGATTCAGATGAAGATCAGGGTAATCAAGAAGCGAATCCACTGATGGTGCCACTTAATGATGGGGCAGAGCTCACCCAAGAGGAGATCATGAATAAGTGGTTTAGTCAGGATGTCTTTACTGAAGCTGTAGAGGACGGAGACTTTGAGAAGGACGGGAGTAAAGATGAAATGGATATAGATGAGCCTAAGGAGAAGACATCCATTGCCGAAAAggtcaaagaaaataaaacagcaGCTTCAGCAGTGGTAGATCACCCTCAACCTCGAGCCTCCAAGGCAGCGGAGGATTTTGAAATAGTTCCTGCGCCTGCCACTGATTCAAGTGATTATTCATCCTCTGATGAATCAGAGGAGGAAGATGTTGAAACCAAAGCTGAGATATTGGCTTATGCTAAGAAGATGATGAGGAAAAAGCAACGGGAGCAGATACTGGATGATGCATATAATAAGTACATGTTTGATGACGAGGGATTGCCCAAGTGGTTTCTAGATGAGGAGAGGAGACACCGCCAACCAATAAAGCCTATTTCCAAAGAGGAAATTGCTGCAATGAGAGCGCAATTTAAAGAGATTGATGCTCGGCCAGCAAAGAAGGTGGCAGAGGCCAAAGCACGGAAGAAGCGTGCTGCAATGAGGAAACTTGAGAAGGTACGGAAGAAGGCCAATGCCATATCAGATCAGACAGAGATATCTGATCGTTCGAAGAGGAAGCAAATTGAACAACTATATAGAAAGGCTGCTCCGAAGAAGCCTAAAAAGGAATATGTAGTTGCAAAGAAAGGTGTCCAAGTAAAGGCTGGCAAGGGAAAAGTCCTTGTTGATCGCAGAATGAAGAAGGATGCTAGGAAACGTGGAATGGGTAAGGCAGGAAAAGGAGGTTCCAAGATGAAGGGCAAAGCTCCAAAGGGCAGAGGATCTTCAAAGGCCTCTTCGAAGGCGGGAAGGCAGAGGAATAAATGA | 2493 | 0.4669 | MGKAKGKHRLDKFYHLAKEHGYRSRASWKLVQLNSKFRFLESARGVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIAPIRGAIAIQEDITRPECKSRIKKLMNEHGCRAFDVILHDGSPNVGGAWAQEAMSQNALVIDAVKLATHFLAPNGIFVTKIFRSQDYSSIVYCLKQLFEKVEVDKPAASRSESAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRENKQKRHRDGYEDGNTTLRKVSSAANFIWSDSPLEILGSVTSITFTDPADLPIKDHDLTTEEIKSLCDDLRVLGKQDFKHLLKWRIHIRKALSPTQKPDPTTTEQMENDHKVDEEDRILNEMEELTYVMDRKKKHAKKLLAKRRAKDKARKATGMQMDVIEDGYVDQELFSLSSIKGKKDLVAVDNTEYEGDEGEVEDSENEEIHEGPQHSSSDLQDSDEERKRYDEQMEDLLDQAYERFVIRKEGSTKQRKRIKKSYDAEAQLLEGGEDDDIVQSKYDSDEDQGNQEANPLMVPLNDGAELTQEEIMNKWFSQDVFTEAVEDGDFEKDGSKDEMDIDEPKEKTSIAEKVKENKTAASAVVDHPQPRASKAAEDFEIVPAPATDSSDYSSSDESEEEDVETKAEILAYAKKMMRKKQREQILDDAYNKYMFDDEGLPKWFLDEERRHRQPIKPISKEEIAAMRAQFKEIDARPAKKVAEAKARKKRAAMRKLEKVRKKANAISDQTEISDRSKRKQIEQLYRKAAPKKPKKEYVVAKKGVQVKAGKGKVLVDRRMKKDARKRGMGKAGKGGSKMKGKAPKGRGSSKASSKAGRQRNK | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 792 | 813 | - | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 479 | 525 | - | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 503 | 517 | - | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 721 | 748 | - | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 727 | 748 | - | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 555 | 583 | - | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 436 | 463 | - | - | |
| Ssu3g2850 | 830 | Hamap | Ribosomal RNA large subunit methyltransferase E [rlmE]. | 6 | 202 | IPR015507 | GO:0001510|GO:0008168 | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 479 | 496 | - | - | |
| Ssu3g2850 | 830 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 21 | 202 | IPR029063 | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 422 | 463 | - | - | |
| Ssu3g2850 | 830 | PANTHER | RIBOSOMAL RNA METHYLTRANSFERASE | 1 | 803 | - | - | |
| Ssu3g2850 | 830 | Coils | Coil | 708 | 738 | - | - | |
| Ssu3g2850 | 830 | Gene3D | Vaccinia Virus protein VP39 | 19 | 208 | IPR029063 | - | |
| Ssu3g2850 | 830 | PANTHER | RRNA METHYLTRANSFERASE-RELATED | 1 | 803 | - | - | |
| Ssu3g2850 | 830 | Hamap | AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. | 1 | 802 | IPR028589 | GO:0008649|GO:0031167 | |
| Ssu3g2850 | 830 | Pfam | FtsJ-like methyltransferase | 22 | 200 | IPR002877 | GO:0008168|GO:0032259 | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 777 | 830 | - | - | |
| Ssu3g2850 | 830 | Pfam | Domain of unknown function (DUF3381) | 235 | 383 | IPR024576 | - | |
| Ssu3g2850 | 830 | Coils | Coil | 448 | 468 | - | - | |
| Ssu3g2850 | 830 | MobiDBLite | consensus disorder prediction | 555 | 633 | - | - | |
| Ssu3g2850 | 830 | Pfam | Spb1 C-terminal domain | 603 | 795 | IPR012920 | GO:0005634|GO:0006364|GO:0008168 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g2850 | K14857 | - | gmx:100790741 | 1328.92 |
Event-related genes