Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2848 atgGAAAAGAGCAAAATCTTGGTGATTGGGGCGACGGGAAACCTGGGTTACCATTTAGCGGAAGCAAGCCTGAGGTTTGGTCATCCAACATTTGCTCTTGGTAGAGACTCTGCTTTCTCTGACCCTATCAAGTCCCAAAAGCTTCACTCCCTTTCTCAAGCCGGAGCTACCCTTCTcaaaGGTTCGCTCGAAGACGAGGCCAGCATTGCTGAGGCTGTAAGGTTAGTAGACGTGGTCATTTGTGCCGTTTCAGCCAAACAGATTCAGCATCAAAAGCTTCTTATCCGACTTATCAAACAAGCTGGCTCTATCAAGCGGTTCATCCCATCTGAATTTGGATCAGATCCTACCAGGGTTTGGTTACCTGAGCTTGATAATGGCTATAATTTCTATACAACCAAAGTTGAAATTCGACGACTTGTGGAGGCTGAAGGCATTCCATACACTTGCATCTCATGCAATTTCTTTATGAGCTTTTTGCTTCCTTCTCTTGTTCAGCCAGGCTTAGAAGCCCCTCCTAGGGACAAGGTCACCATATTTGGTGATGGGAATACAAAGGGTGTCTTCATGAAAGAAAGTGATGTTGCTGCCTTCACTATCAGTGCAGTGGACGACCCTCGTACGTTAAATAAAGTGTTGTACTTGAGACCCCCAGGAAACGTTTGTTCTTTGAATGAACTGGTTGAGATGTGGGAGATTAAGATTGGCAAGAAGGTTGAGAAATTGCATGTCTCAGAAGGAGAGTTGCTCCAGAAAATCAAAGGGACTTCTTTCCCTGCCAACTTTGAAATGCTCTTTATATATTCTGCTTTCATAAAGGGAGATCACACATACTTTGATATTGAGCCATCCTCTGGTGTGAATGGTACCGAACTGTATCCATATCTGAAATATATCACAATCAGTGAATTCTTAGACACACTAGTTTAG 930 0.4344 MEKSKILVIGATGNLGYHLAEASLRFGHPTFALGRDSAFSDPIKSQKLHSLSQAGATLLKGSLEDEASIAEAVRLVDVVICAVSAKQIQHQKLLIRLIKQAGSIKRFIPSEFGSDPTRVWLPELDNGYNFYTTKVEIRRLVEAEGIPYTCISCNFFMSFLLPSLVQPGLEAPPRDKVTIFGDGNTKGVFMKESDVAAFTISAVDDPRTLNKVLYLRPPGNVCSLNELVEMWEIKIGKKVEKLHVSEGELLQKIKGTSFPANFEMLFIYSAFIKGDHTYFDIEPSSGVNGTELYPYLKYITISEFLDTLV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2848 309 CDD PCBER_SDR_a 5 304 IPR045312 GO:0016491
Ssu3g2848 309 PANTHER PINORESINOL REDUCTASE-RELATED 2 307 - -
Ssu3g2848 309 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 2 307 - -
Ssu3g2848 309 Gene3D - 153 305 - -
Ssu3g2848 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 280 IPR036291 -
Ssu3g2848 309 Pfam NmrA-like family 6 239 IPR008030 -
Ssu3g2848 309 Gene3D - 5 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2848 Ssu-Chr3 83079668 83089822 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2848 - - var:108339735 514.998