Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2838 ATGATTCCCAGCGCCGGCGTTCCGAAGAAGCGGCAACGCACCACCGCCGCCCGCCGTTGCTCCTCCACGGCCGGCACCACCTCCTCCGCCTCCGACGTAACCCTAACCGAACTCTCCCAAAGCCTCGACCGTCCCTCTCCCATGGCGGACGACCGTCCCTCTCCCGCGGCGGACGACGCTCTCCATTTCAACGACGCCGCCACAGCCGACGTCGTCCTCCGCCTCTTCATCGACGCTCCCTCTCTGCTCGATTCCTCCCCCTCCGCCACCGCCGACTCCGTCTCCAACTCCGACCTCCACGTCTACCTCCACTCCGACATACTCCGCCGCTCCAAATACTTCTCCGCGCTCCTCTCCGACCGCTGGATCGGCCACGTCCACGCGGCGGAACACTCCTCCTCCTCCGTCCGCGATCGCGACCTCTTCCGCCTCAACCTCGGTGTTCCCCCCGCCGGCGGCTCGATCCAGTCGCATCTCACCGTCCTGGAGCTTCTCTACACGAGCGACTTCGGCGCCGCGGTCGACAGCGCGTCGACGGCGCTGGATCTGCTGCCGGTGGCGCTGGAACTGCTCTTCGAGGAGTGCGTGCGCTGGTGCGTGGACTTCCTCGAAGCGGTGCCGTGGacggaggaagaagaaaagcgAGTGGAGAGATTGATCCCTTTCCTGAGCGAGGAAGAGTCGAAGGAACTCGTCGCTAGGGTTTCGCCTTCGGGAGAGGACTCGTGCGAGGCGATGCTGCAAGGATTGGTTTCGTCGGCGATGAACAGTTACGGGAACACGGCGTTCGTGAAGGCGTTCGTGGGGAAGATACTGAGGGACTTGTCGTCGAGGGAGACGGCGAAGAGAGTGTTGGAGAAGGCGTTCGCGATGAGCTTGAAGACGGTGAAGGAGTCGTTGGAGGATTATTCGAGTCCCGTGTTCAGAGGGGATCATAATGAGACGGAGGCTATTCAGAGGTTGAATCTGCACAAGGCTTCTACTAACGGGAAGCATCTTCTGTGGCTCGTGGAGAGGATGATTGAGCTTAGGGTTGCGGATGTCGCTGTGAGGGAGTGGAGCGAGCAAGCGGCTTTTACTGCTGATTTGCAGAGGGCGTTTCGGGATGATGCCTGGAGGAACATTGTGCCTGGCCTTCCCGCTGTGATTCTCAGGTGTACTTGTAAGCTCGCTAATGCTGTCACTGCTGGCACCATTCTCGCTTCTAGACAGGTGAGAAGGAAGCTCGTAGAAGATTGGCTGCCCGTTTTGGTTGTATGCAAAGATAATGTTTCACCAATATCACCCAGCAACAAATCATTGTATCTGGAACTGGAAGAAACATTCTTGCGAATCATCTCCACATTGCCCATGTCTGATGCTCAAGAATTACTGCAGCGGTGCCTCAGCTTTTCAACCCGAAATGTTGAAGATTGTCTTCATTTGGTGACTGCATTCAACACCTGGTTCAGGCGTGCAGCCCGACCCCTGAAACCAGACTTTGATCAATGA 1491 0.5748 MIPSAGVPKKRQRTTAARRCSSTAGTTSSASDVTLTELSQSLDRPSPMADDRPSPAADDALHFNDAATADVVLRLFIDAPSLLDSSPSATADSVSNSDLHVYLHSDILRRSKYFSALLSDRWIGHVHAAEHSSSSVRDRDLFRLNLGVPPAGGSIQSHLTVLELLYTSDFGAAVDSASTALDLLPVALELLFEECVRWCVDFLEAVPWTEEEEKRVERLIPFLSEEESKELVARVSPSGEDSCEAMLQGLVSSAMNSYGNTAFVKAFVGKILRDLSSRETAKRVLEKAFAMSLKTVKESLEDYSSPVFRGDHNETEAIQRLNLHKASTNGKHLLWLVERMIELRVADVAVREWSEQAAFTADLQRAFRDDAWRNIVPGLPAVILRCTCKLANAVTAGTILASRQVRRKLVEDWLPVLVVCKDNVSPISPSNKSLYLELEETFLRIISTLPMSDAQELLQRCLSFSTRNVEDCLHLVTAFNTWFRRAARPLKPDFDQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2838 496 MobiDBLite consensus disorder prediction 1 59 - -
Ssu3g2838 496 MobiDBLite consensus disorder prediction 17 43 - -
Ssu3g2838 496 Gene3D Potassium Channel Kv1.1; Chain A 62 219 IPR011333 -
Ssu3g2838 496 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 9 491 IPR038920 -
Ssu3g2838 496 PANTHER EXPRESSED PROTEIN 9 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2838 Ssu-Chr3 82910858 82914016 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2838 - - gmx:100793732 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2838 3 82910858 82914016 Ssu3g2838 3 82910858 82914016 ECH