Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2836 ATGGACGAGAAACTCATACAGCGCTTAGAATCGGCGGTGTCGCGCTTGGAGGCGCTATCCGCCGGATTCCACCCCTCGGCCTCACCGGCCGGCGGGGCCGATGCTCCCGATGCGGCGCTCGATCCGTCCGTCGTCGCCTTCGCCGATCTGATCGACCAGTATGTCGGTAGGGTTTCCCGTGCTGCAGAGATTATCGGAGGACAGGTCTTGGAAGTGACCAAGCTTGTGCAGGAAGCTTTCGTTGTTCAGAAAGAGCTGttgattaagctcaaacacacTCAGAAGCCTGACCTTGCTGGGTTGGCTGAATTTCTGAAACCATTGAATGAAGTGATCGCAAAAGCTACCGCATTGACAGAGGGAAGGAGAtctgatttttttaatcacttaaaGGCTGCTGCTGACAGTCTCTCTGCCCTAGCATGGATTGCATATACAGGGAAGGATTGTGGTATGAGCATGCCAATTGCTCATGTCGAAGAAAGTTGGCAAATGGCTGAGTTTTACAGCAACAAGGTGCTGGTAGAGTACAGAAACAAAGACCCAAATCATGTTGAGTGGGCCAAAGCTCTTAAAGAGTTGTATCTACCTGGATTGAGAGATTATGTCAAGAGCTTTCATCCTTTAGGCCCTGTTTGGAGTCCAACAGGAAAAATAATTGCTCCATCAAAAGCTTCTGCTCCTGTTGCACCTGCTGCCCCTCCCCCTGCACCTGCTTCTCTCTTTAGTTCTGAATCATCTCAGGCTTCATCTTCTAAGCCTAAAGAGGGGATGTCTGCAGTTTTTCAACAAATCAGTTCGGGAAATGTCACTTCAGGTTTGAGAAAGGTTAAGGATGATATGAAGACTAAGAATCGCCCTGATAGAACTGGAGTTGTTGGCGCTAGTGAAAAAGAGAGTCATGCAAGTCCACGTGTGTTTTCTAAAGCAGGACCTCCAAAATTTGAACTTCAAATGGGCCGCAAATGGGTTGTTGAGAATCAAATTGAGAAGAAAGACTTGGTCATTAAAGATTGTGATGCAAAGCAGTCTGTATATATTTATGGATGCAAAAACTCTGTTTTGCAGATTCCAGGCAAGGTCAACAATATAACTATTGACAAATGCACAAAGATGGGAGTTGTATTTAAGGATGTTGTTGCAGCTTGTGAGATTGTAAATAGTAACGGGGTTGAGGTTCAATGCCAGGGTGCAGCTCCTACAATTTCAGTGGACAACACTTCTGGCTGCCAGCTATATCTGAGCAAAGATTCTTTAGAAGCATCCATAACTACAGCAAAGTCAAGTGAGATCAATGTATTGGTTCCTGGTGCTGAGCCTGATGGTGATTGGGTGGAGCATTCTTTGCCGCAACAATACATTCATTTGTTCAAGGATGGGCATTTTGAAACAACTTCTGCTTCTCATTCTGGAGGTTAA 1419 0.4496 MDEKLIQRLESAVSRLEALSAGFHPSASPAGGADAPDAALDPSVVAFADLIDQYVGRVSRAAEIIGGQVLEVTKLVQEAFVVQKELLIKLKHTQKPDLAGLAEFLKPLNEVIAKATALTEGRRSDFFNHLKAAADSLSALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKVLVEYRNKDPNHVEWAKALKELYLPGLRDYVKSFHPLGPVWSPTGKIIAPSKASAPVAPAAPPPAPASLFSSESSQASSSKPKEGMSAVFQQISSGNVTSGLRKVKDDMKTKNRPDRTGVVGASEKESHASPRVFSKAGPPKFELQMGRKWVVENQIEKKDLVIKDCDAKQSVYIYGCKNSVLQIPGKVNNITIDKCTKMGVVFKDVVAACEIVNSNGVEVQCQGAAPTISVDNTSGCQLYLSKDSLEASITTAKSSEINVLVPGAEPDGDWVEHSLPQQYIHLFKDGHFETTSASHSGG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2836 472 MobiDBLite consensus disorder prediction 273 311 - -
Ssu3g2836 472 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 43 236 IPR036222 -
Ssu3g2836 472 Gene3D - 311 471 IPR016098 -
Ssu3g2836 472 MobiDBLite consensus disorder prediction 240 258 - -
Ssu3g2836 472 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 471 IPR001837 GO:0003779|GO:0007010
Ssu3g2836 472 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 312 471 IPR036223 -
Ssu3g2836 472 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Ssu3g2836 472 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 471 - -
Ssu3g2836 472 Gene3D - 43 218 IPR036222 -
Ssu3g2836 472 SMART carp 388 425 IPR006599 -
Ssu3g2836 472 SMART carp 350 387 IPR006599 -
Ssu3g2836 472 Pfam Adenylate cyclase associated (CAP) N terminal 3 58 IPR013992 GO:0003779|GO:0007010
Ssu3g2836 472 ProSiteProfiles C-CAP/cofactor C-like domain profile. 312 449 IPR017901 -
Ssu3g2836 472 Pfam Adenylate cyclase associated (CAP) C terminal 312 469 IPR013912 GO:0003779|GO:0007010
Ssu3g2836 472 MobiDBLite consensus disorder prediction 226 258 - -
Ssu3g2836 472 MobiDBLite consensus disorder prediction 275 295 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2836 K17261 - gmx:100793194 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2836 3 82880160 82884798 Ssu3g2836 3 82880160 82884798 ECH