Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2835 ATGGCTCCACATTTCAACCCTTCAATATTCCTGCTCCGCCTTTCCCTGATCACCACTGCAATGTGCTTTGCTGTTTCGCAACCCTTCATCGGCATCAACTACGGCCAGGTCGCCAACAACCTTCCGCCGCCGGAGGCCTCGGCGAAGCTTCTCAAGTCCACGACTGTCGGAAAAGTCCGACTTTACGGGGCCGATCCGGCGATCATCAAGGCCTTGGCGAACTCTGGCGTCGAAATCGTGATCGGCGCGACCAATGAGATCATTCCGAGTCTAGCCTCCGATCCCGAGTCGGCGACTCAGTGGGTGAACGCGAACGTGCTACCCTACTACCCCGCAAGCAACATCACTCTGATAGCCGTCGGCAACGAGGTCATGAGCTCCGGCAACAAGGGCCTCATCTCGCAGCTTCTCCTGGCAATGCAAAATGTCCAGAATGCCCTCGACTCGGTCTCACTCGGCGGCAAAATAAAGGTTTCTATGGTGCATTCGATGGCCGTGTTGACTCACTCAGATCCTCCATCGGCCGGGTCCTTCGACCCAGGTCTCATGGACACCCTCCAACAGTTACTAGTGTTTCACAAGGATAACGAATCACCCTTCATGGTCAACCCGTACCCGTTCTTCGCTTACCAGAGCGACCCAAGACCCGAAACGCTCGCCTTCTGCTTGTTCCAACCTAATTCGGGTCGGGTCGACAAGGGGAGCGGGAAGGTTTATAAAAACATGTTCGATGCCCAGGTGGATGCTGTGCACGCCGCTTTGAGCGGTATGGGGTTCGAGGACATTGAGATTGTGGTTGCTGAGACGGGATGGCCCTCTCGTGGAGACAGCAATGAAGTAGGAGCCAGTGTTGAAAATGCCAGGGCCTATAATGGGAACCTGATTGCACACCTTAGATCATTGGCTGGCACTCCTTTGATGCCTGGGAAATCTGTGGACACATTCATTTTTGCACTCTATGATGAGGATTTGAAACCTGGTCCAGCGTCTGAGCGAGCATTTGGTCTGTTCAAAACTGATCTTACCATGGCATATGATGTTGGCCTAGACAAGTCTAGCTCTAGCCAGAATCCACCAACTTGTCCAAAAACTCCTGTTACTCCAGCTCCTAAAACGGCAACACAATGGTGCATCCCGAAAGTGGAAGTGATTGATGCTCAATTGCAGGcaaatattgattttatctGTGGTAGCCAAGTTGTAGATTGTGGGCCAATTCAACCAGGAGGTGCTTGTTATGAACCTGACACAGTAGCATCTCATGCTGCCTTTGCCATGAATCTCTACTACCAGAAGGTTGGCAGAAATCCATGGAACTGTGATTTCTCTCAAACAGCAGTGCTCACATCCCAAAATCCAAGTTACAATGCATGTGTTTATCCCGGTGGGAGTACCTGA 1398 0.5136 MAPHFNPSIFLLRLSLITTAMCFAVSQPFIGINYGQVANNLPPPEASAKLLKSTTVGKVRLYGADPAIIKALANSGVEIVIGATNEIIPSLASDPESATQWVNANVLPYYPASNITLIAVGNEVMSSGNKGLISQLLLAMQNVQNALDSVSLGGKIKVSMVHSMAVLTHSDPPSAGSFDPGLMDTLQQLLVFHKDNESPFMVNPYPFFAYQSDPRPETLAFCLFQPNSGRVDKGSGKVYKNMFDAQVDAVHAALSGMGFEDIEIVVAETGWPSRGDSNEVGASVENARAYNGNLIAHLRSLAGTPLMPGKSVDTFIFALYDEDLKPGPASERAFGLFKTDLTMAYDVGLDKSSSSQNPPTCPKTPVTPAPKTATQWCIPKVEVIDAQLQANIDFICGSQVVDCGPIQPGGACYEPDTVASHAAFAMNLYYQKVGRNPWNCDFSQTAVLTSQNPSYNACVYPGGST 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2835 465 Pfam X8 domain 375 446 IPR012946 -
Ssu3g2835 465 Pfam Glycosyl hydrolases family 17 30 347 IPR000490 GO:0004553|GO:0005975
Ssu3g2835 465 SMART X8_cls 375 460 IPR012946 -
Ssu3g2835 465 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 7 10 457 - -
Ssu3g2835 465 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Ssu3g2835 465 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Ssu3g2835 465 Gene3D Glycosidases 29 356 - -
Ssu3g2835 465 Gene3D - 371 460 - -
Ssu3g2835 465 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 457 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2835 Ssu-Chr3 82846506 82851874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2835 26 461 Miscellaneous Gene Families AT2G16230 63.761 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2835 - - gmx:100778892 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2835 3 82846506 82851874 Ssu3g2835 3 82846506 82851874 ECH