Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2834 ATGTCTGTTATGGAGCTCAAAGAGCGTCACTCCGCCGCCACCGACACCGTCAACAACCTCAGACAGCACTTAAAGCAGAAGCGCCTTTCTTTGCTCGATACAGATATTTGTGAGTACGCAAAGTCTCAGGGTCGAACACCTGTGACCTTTGGACCTACGGATCTGGTTTGCTGCAGAACATTGCAGGGTCATACGGGAAAGGTGTATTCATTGGATTGGACTTCCGAAAAAAGTCAGATTGTTAGTGCATCCCAAGATGGGCGATTAATAGTGTGGAATGCTCTAACTAGGCAGAAAATCCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACGTGTGCTTTTTCACCAACTGGTCAGTCTGTTGCATACGGTGGCCTCGACAGTGTTTGTTCTATTTTCAATCTTAATTCACCCGCTGACAAGGATGGGAACCTACCTGTTTCCCGGATGCTTAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAACAAGACAGTCGCTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTACTACCGGCCTTAAAACATCTGTCTTTGGAGGAGAGTTTCAGTCTGGACATACTGCAGATGTACTTAGTATCTCCATTAATGGATCCAACTCAAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCTCGATTGTGGGATACTCGCATGGCAAGTCGAGCAGTGCGGACATTTCATGGGCATGAGGGAGATGTTAATGCAGTCAAATTCTTTCCAGATGGAAATAGATTTGGAACTGGCTCAGATGATGGAACCTGCAGATTATTTGACATTAGGACTGGACATGAACTTCAAGTATATTATCAGCAGCACAGTGACAATGACATCCCGCCTGTGACTTCCATTGCATTCTCCATTTCAGGAAGACTTCTTTTTGCTGGATACACAAATGGAGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTGGTCTTGAATTTAGGATCTCTCCAAGACTCTCATGAGGACAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCATTTGGAGGGCATAGGAGGACAACTTAA 1137 0.445 MSVMELKERHSAATDTVNNLRQHLKQKRLSLLDTDICEYAKSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVAYGGLDSVCSIFNLNSPADKDGNLPVSRMLSGHKGYVSSCQYVPDEQDSRLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRMASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHELQVYYQQHSDNDIPPVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQDSHEDRISCLGLSADGSALCTGSWDTNLKIWAFGGHRRTT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2834 378 SMART WD40_4 238 277 IPR001680 GO:0005515
Ssu3g2834 378 SMART WD40_4 280 324 IPR001680 GO:0005515
Ssu3g2834 378 SMART WD40_4 330 370 IPR001680 GO:0005515
Ssu3g2834 378 SMART WD40_4 145 186 IPR001680 GO:0005515
Ssu3g2834 378 SMART WD40_4 96 135 IPR001680 GO:0005515
Ssu3g2834 378 SMART WD40_4 193 234 IPR001680 GO:0005515
Ssu3g2834 378 SMART WD40_4 54 93 IPR001680 GO:0005515
Ssu3g2834 378 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Ssu3g2834 378 Pfam WD domain, G-beta repeat 150 186 IPR001680 GO:0005515
Ssu3g2834 378 Pfam WD domain, G-beta repeat 202 234 IPR001680 GO:0005515
Ssu3g2834 378 Pfam WD domain, G-beta repeat 340 369 IPR001680 GO:0005515
Ssu3g2834 378 Pfam WD domain, G-beta repeat 288 324 IPR001680 GO:0005515
Ssu3g2834 378 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Ssu3g2834 378 Gene3D - 9 370 IPR015943 GO:0005515
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 281 - -
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 369 IPR001680 GO:0005515
Ssu3g2834 378 ProSitePatterns Trp-Asp (WD) repeats signature. 173 187 IPR019775 -
Ssu3g2834 378 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Ssu3g2834 378 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Ssu3g2834 378 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Ssu3g2834 378 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 378 - -
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 195 IPR001680 GO:0005515
Ssu3g2834 378 SUPERFAMILY WD40 repeat-like 54 369 IPR036322 GO:0005515
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 243 IPR001680 GO:0005515
Ssu3g2834 378 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Ssu3g2834 378 PRINTS G protein beta WD-40 repeat signature 173 187 IPR020472 -
Ssu3g2834 378 PRINTS G protein beta WD-40 repeat signature 221 235 IPR020472 -
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Ssu3g2834 378 PIRSF GNBP_B 1 372 - -
Ssu3g2834 378 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 374 IPR016346 GO:0007165
Ssu3g2834 378 Coils Coil 3 23 - -
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 190 - -
Ssu3g2834 378 CDD WD40 57 370 - -
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 236 - -
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 286 IPR001680 GO:0005515
Ssu3g2834 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Ssu3g2834 378 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2834 Ssu-Chr3 82835176 82838183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2834 152 371 Miscellaneous Gene Families AT5G08390 23.182 1.54e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2834 K04536 - gmx:100794776 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2834 3 82835176 82838183 Ssu3g2834 3 82835176 82838183 ECH