Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2831 ATGGAGGAGAAGCGCCGCGACGCCGCTCCCTCCGCCGCCGATTCGCCGGCATCGGAGCCCGCATCGTCTCGCCGCCGCGCCGGAGCCAACAAGAGGAAGTCCGGCGCCCTCAGCGCCTCCGGCTCCTCCTCCACGCCCTCCAAACGCGCCGCTCGTGACAAAGCCTCGCCTCTCCACCTTCCCTCCCTCCACAATGGCCCCCTCACTAGGGCTCGCCAAACCCCCGCCGCCTCCTCCTCCTCCGCTGCTTCCGCTCCCGGCGCCGTCAAACACTCCGAACGCGCTGCCCTCGCCCACCCCTCCGCCGCCGACTCCGCCGCGTTGGCGGAGCAGCTCAAGAGGGAGAGCGAGTGGGAGACTCTCGAGGCTGCGATTGAAGCCCAATTCGAAGCTATCAGATCTCGCGGTGCCAATGCGCACGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGTCACATATCCATCCAATTGAGGAGCGAATGTTGCCTTCTTTCTTTAATGGAAAAACTGAAAATCGGACTCCTAATGTATACATGGAGATACGGAATTGGATAATGAACAAGTTTCATTCAAATCCAAATGTACAAATTGAATTGAAAGATATGTCAGAGCTTAATGTTGGAGACTTGGATGCTAGGCAAGAGGTAATGGAGTTTTTGGACTATTGGGGTTTAATTAACTACCACCCATTCCCTTCAATGGATTCTGCTGTGGCCACTGCTAGTGATGATGGGGAAGCAGAAAAGAATTCCTTGCTTGAAAAATTGTATCACTTTGAAACTCTCCAATTATGTCCACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACGGCCTCTGGTTTGTTTCCAGAGTCTACAATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGACCTATGTACCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATTCTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACTGATCAAGAGACCCTTCTGCTCcttgaagcattagaactttataaagaaaattggAATGAAATTGCAGAACATGTTGGAACAAAATCAAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTGAGGATACCTTTGTTGATTGTGATGATGAAGTTGATGCTGGTTGCAAAGAAACTGTGGATCCAGTTGCCACAAACAATGATTCATCTATGGACAAGGATGCTTCAGAATGTATTGAGAATGATACTAGTGATGGCATCAAAGACCATGATAAAACTTCCAAGGCTGAAGATGTTGAAGTGAAGGTGAATCAGGAGGAGACTCCAAAGTTACAAGGCAGTGATGAGAAAGCTAGCAAGGGAACTTCTAAATCAGAAGATGCTGTTGAGGTGAAGTTTGATCAGGTAGCGGGCAATGACTGTGCTATAAATGCTCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGGACCTGAAGGCCCTTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAACTTTCCTTGCACACTTGGTGGGTTCTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATAAAAACCATGTCAAGAAATTCTCCTGGCACTGAGCTTGCAGCAAGGTCTTGCTTTCTTCTGGAAGATCCGCCAGATAATAAGAAGGAACCAACTAGTTCTGAGAGGGATTCTAAAAGTGAGGGAGATCAGGATGAAGTAAATGTAAAACAGGATAAACCAATGTTGGATGATAAAGATATACCAAATGATcacaataatatgaaaattgaaaGTAATGCTTTAGAAGACAAGGGACAGCCGGCTTCTACAGATGATGGAGCCTCAGAAAAACCAATTTCTTCAAAGGAGCAAGCAATGATTAATCATGAATGTGGGCTTGACAATTGTAATGATCCCAACAATGCAAAGCTACCCAATGATCAAGCACCAGGCACTTTGCATAATTCAGGCAGTTCAACATCCAAGGCTGAAATTCCACCTAGTTCTAACAAGGATCGGGAGGGAACTTTAATTGAAGAACCTTGCCATGCTGTAAAGGACAGACATATGTCTGATTCTCTTCCATCAGAGAAGAAAGAACTTCATCAGTCAATTAAATCCAATTTACCAGGAGAGCATCCAAAGCCCGTAGAGACATCGAAAACTGCTGAGATGGTTTCTGATTCTATTCCCCCAGCTAAGAGCAAGCCACAAAATCCAGAATCTACAAATCCAGTTCGAGAATCTCTAGAAACAACAGACTCAGTAATGGATGTTGATGGAGTTCCTAATTCCTTGCCATCAGAAAAGATTGACTCTCAGCCACTGTTTACATCAAAATCATCCGAATGTAATGGAACAGAAAAGGATGCAGATATGATGTCACCTTCAAATCCAGTTAAATCAAATTCTGGTGCTGAAAATGGTTCAAATAcagGTAAAGATTGTGCAGATAATGGAGCAAAAGTGGAAGATGATGGTACAAAGACTAAACAGGATAGCAATTTTGAGAAAGTGAAACGTGCCGCAATTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAACTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAGCTTACTTCCTTGTTGATAGAAAAGCAGTTGCACAAGTTGGAAACAAAGTTGGCTTTTTTCAATGATGTGGATAATGTGGTGGTGAGGGCAAGGGAGCATGTAGAGCGATCACGGCATAAGCTTTATCATGAGCGTGCTTTGATAATTGCATCACGGCTTGGTATACCAGCTTCCTCATCTAGAGGTGTACCACCATCTATACCAACCAATAGAATTCCTACAAATATTGCAAACTCACTCCCAAGACCACAAATCATGATGAATCCGCAAAGGCCACTGATTTCTAGACCTACAGGCACTGTAGCTACTACTCTTCAAAACCCATTTGCATCTTCAACTGCAGCAGGAAATTCAGTTCGGCCATCTAACCAGGAAAAGCTTTCTTCAGTTGGGACAAAATAA 3108 0.4447 MEEKRRDAAPSAADSPASEPASSRRRAGANKRKSGALSASGSSSTPSKRAARDKASPLHLPSLHNGPLTRARQTPAASSSSAASAPGAVKHSERAALAHPSAADSAALAEQLKRESEWETLEAAIEAQFEAIRSRGANAHVVPTHCGWFSWSHIHPIEERMLPSFFNGKTENRTPNVYMEIRNWIMNKFHSNPNVQIELKDMSELNVGDLDARQEVMEFLDYWGLINYHPFPSMDSAVATASDDGEAEKNSLLEKLYHFETLQLCPPVQRSSQMTPATASGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIEDTFVDCDDEVDAGCKETVDPVATNNDSSMDKDASECIENDTSDGIKDHDKTSKAEDVEVKVNQEETPKLQGSDEKASKGTSKSEDAVEVKFDQVAGNDCAINALKEAFAAVGYSPGPEGPSSFAEVGNPVMALATFLAHLVGSDVAVASAHSSIKTMSRNSPGTELAARSCFLLEDPPDNKKEPTSSERDSKSEGDQDEVNVKQDKPMLDDKDIPNDHNNMKIESNALEDKGQPASTDDGASEKPISSKEQAMINHECGLDNCNDPNNAKLPNDQAPGTLHNSGSSTSKAEIPPSSNKDREGTLIEEPCHAVKDRHMSDSLPSEKKELHQSIKSNLPGEHPKPVETSKTAEMVSDSIPPAKSKPQNPESTNPVRESLETTDSVMDVDGVPNSLPSEKIDSQPLFTSKSSECNGTEKDADMMSPSNPVKSNSGAENGSNTGKDCADNGAKVEDDGTKTKQDSNFEKVKRAAISTLAAAAVKAKLLANQEEDQIRQLTSLLIEKQLHKLETKLAFFNDVDNVVVRAREHVERSRHKLYHERALIIASRLGIPASSSRGVPPSIPTNRIPTNIANSLPRPQIMMNPQRPLISRPTGTVATTLQNPFASSTAAGNSVRPSNQEKLSSVGTK 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2831 1035 SMART sant 360 408 IPR001005 -
Ssu3g2831 1035 ProSiteProfiles Myb-like domain profile. 356 406 IPR001005 -
Ssu3g2831 1035 ProSiteProfiles Zinc finger ZZ-type profile. 302 356 IPR000433 GO:0008270
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 802 819 - -
Ssu3g2831 1035 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 359 398 IPR017930 -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 674 701 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 1 102 - -
Ssu3g2831 1035 ProSitePatterns Zinc finger ZZ-type signature. 307 333 IPR000433 GO:0008270
Ssu3g2831 1035 Gene3D - 359 410 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 439 493 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 964 986 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 1013 1035 - -
Ssu3g2831 1035 Gene3D - 146 231 IPR036388 -
Ssu3g2831 1035 ProSiteProfiles SWIRM domain profile. 140 237 IPR007526 GO:0005515
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 702 741 - -
Ssu3g2831 1035 Pfam Zinc finger, ZZ type 304 339 IPR000433 GO:0008270
Ssu3g2831 1035 CDD ZZ_RSC8 305 349 IPR041984 -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 757 786 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 583 633 - -
Ssu3g2831 1035 CDD SANT 380 405 IPR001005 -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 961 986 - -
Ssu3g2831 1035 SUPERFAMILY RING/U-box 297 350 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 831 850 - -
Ssu3g2831 1035 Pfam SWIRM-associated region 1 881 958 IPR032451 -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 580 866 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 67 86 - -
Ssu3g2831 1035 PANTHER SWI/SNF COMPLEX-RELATED 41 999 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 35 50 - -
Ssu3g2831 1035 Gene3D - 299 348 IPR043145 -
Ssu3g2831 1035 SUPERFAMILY Homeodomain-like 147 229 IPR009057 -
Ssu3g2831 1035 Pfam Myb-like DNA-binding domain 362 404 IPR001005 -
Ssu3g2831 1035 Pfam SWIRM domain 143 228 IPR007526 GO:0005515
Ssu3g2831 1035 SUPERFAMILY Homeodomain-like 359 412 IPR009057 -
Ssu3g2831 1035 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 41 999 - -
Ssu3g2831 1035 MobiDBLite consensus disorder prediction 426 493 - -
Ssu3g2831 1035 ProSiteProfiles SANT domain profile. 363 410 IPR017884 -
Ssu3g2831 1035 SMART zz_5 301 345 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2831 Ssu-Chr3 82803121 82808617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2831 305 402 EF-hand Containing Proteins AT3G07740 36.207 4.09e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2831 K11649 - gmx:100799723 1715.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2831 3 82803121 82808617 Ssu3g2831 3 82803121 82808617 ECH