Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2829 ATGAGAGGAATGAGAGTGATTAACACAGGAGCTCTCCTAAGCGTTCTATGTTTCAATAGAAGCAGAGCCAGGGAATTGGTTGGAACAGAAAACAAATTCTTCGAAGCAAAAGCAACCTCAGATGATCATCAAACAGCGCACACAGAACATACACATGCTCACACCCACCACGTGGATCACATAGACCCTTCTGTAATGGTGTTCTTCACCTTCAAAGATTTGACGGTTGGGAAAACAATGCCTATTTATTTTCCCAAGAGGGACCCTGCAACCTCCCCTAAGTTGTGGCCAAGAGAAGAAGCTGACTCACTCCCTTTCTCATTGAACCAACTCCCAAACCTTCTCaaattcttctctctctctccggATTCTCCCCAAGCCAAGGCCATGGAAGATACCCTGAGTGAATGTGAGAGCAAACCCATCAAAGGAGAGGTCAAGTTCTGTGCCACCTCTTTGGAGTCGATGCTTGACTTCACTCAAACCATTCTTGGGTTCACATCTGATCTCCAAGTTTTGGCCACTTCTCACCAAACCAAATCCAGTGTCACTTTCCAAAACTACACTATCTTAGAAAACATCATAGAAATCCCAGCTCCCAAGATGGTCGCTTGTCACACCATGCCTTACCCTTATGCTGTTTTTTACTGCCACAGCCAAGAAAGTGAGAACAGGATATATAGGGTCTCACTTGCAGGTGAAAACGGAGATAGGGTGGAAGCTATGGTTGTTTGTCACATGGATACATCCCATTGGGGGCATGGCCATGTTTCATTTCAAGTTCTAAAGGTTAAACTCGGAGTCTCTTCAGTGTGCCACTTTTTCCCAGCAGATAATCTCATCTGGGTTCCCAAACTGCAACCCCACGGTTTTTCCACCATGTGA 885 0.4429 MRGMRVINTGALLSVLCFNRSRARELVGTENKFFEAKATSDDHQTAHTEHTHAHTHHVDHIDPSVMVFFTFKDLTVGKTMPIYFPKRDPATSPKLWPREEADSLPFSLNQLPNLLKFFSLSPDSPQAKAMEDTLSECESKPIKGEVKFCATSLESMLDFTQTILGFTSDLQVLATSHQTKSSVTFQNYTILENIIEIPAPKMVACHTMPYPYAVFYCHSQESENRIYRVSLAGENGDRVEAMVVCHMDTSHWGHGHVSFQVLKVKLGVSSVCHFFPADNLIWVPKLQPHGFSTM 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2829 294 PANTHER BURP DOMAIN PROTEIN USPL1 38 286 - -
Ssu3g2829 294 Pfam BURP domain 67 284 IPR004873 -
Ssu3g2829 294 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 38 286 IPR044816 -
Ssu3g2829 294 ProSiteProfiles BURP domain profile. 68 285 IPR004873 -
Ssu3g2829 294 SMART BURP_2 66 285 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2829 Ssu-Chr3 82770542 82772322 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2829 - - gmx:100800777 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2829 3 82770542 82772322 Ssu3g2829 3 82770542 82772322 ECH