Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2826 ATGGCCCAAAAACGACAAGGAGATCCAATGGGCTTTGAGAAACACAACCTTGGATCTTCGTGGGATGGAATAAAAGATTGGAATCTCTGTGGCACCTTGTTTCGGAGTTTCAACAATGGTACCTCAAGCTTTATCAGTGCCTGCGAGTGCCAGCTTCACTATCGCTTCTCGCAGGAGAAGTCCCTCCCACCTTGTATTTTCTCGCAGAACCTAAAATTTGAACTCCCATTTTACCAGAAACCCGTGCTCGATAGCTTCTTCCTTGCCAAGCCCATATGGCCATTCAGCAGAAGGTTATCAAGTAAAAGCCGTGGCTTTCCTTTACAACTTGATGAGAAAAATATCCATGATGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGAAGGGGAATCCACCAATAACACCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCACAGCTTGTGACTCTAGCTACTATTGATGAAAATGCAGATATACTGGTTTATATAAATTGCCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACTGTGTGTTTCGGAGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGTGGGGAGAAGGGAATGCGCTACGCAATGCCAAATGCTCGCATAATGATACATCAACCACAGAGTGGATGTGGGGGTCACGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTACAGTGCTTTTACTGGACAGCCATTAGAGAAGGTGCAACAGTATACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 966 0.4441 MAQKRQGDPMGFEKHNLGSSWDGIKDWNLCGTLFRSFNNGTSSFISACECQLHYRFSQEKSLPPCIFSQNLKFELPFYQKPVLDSFFLAKPIWPFSRRLSSKSRGFPLQLDEKNIHDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2826 321 Pfam Clp protease 146 319 IPR023562 -
Ssu3g2826 321 SUPERFAMILY ClpP/crotonase 145 319 IPR029045 -
Ssu3g2826 321 CDD S14_ClpP_2 146 316 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g2826 321 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 134 320 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g2826 321 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 113 321 - -
Ssu3g2826 321 ProSitePatterns Endopeptidase Clp histidine active site. 239 252 IPR033135 -
Ssu3g2826 321 Gene3D - 123 321 - -
Ssu3g2826 321 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 113 321 IPR023562 -
Ssu3g2826 321 PRINTS Clp protease catalytic subunit P signature 217 234 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g2826 321 PRINTS Clp protease catalytic subunit P signature 238 257 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g2826 321 PRINTS Clp protease catalytic subunit P signature 146 161 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g2826 321 PRINTS Clp protease catalytic subunit P signature 186 206 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g2826 321 PRINTS Clp protease catalytic subunit P signature 295 314 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2826 Ssu-Chr3 82712286 82715799 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2826 K01358 - gmx:100799710 431.024